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KLF7 (Kruppel like factor 7)

Identity

Other aliasUKLF
HGNC (Hugo) KLF7
LocusID (NCBI) 8609
Atlas_Id 57351
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 207074138 and ends at 207166016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KLF7 (2q33.3) / PARD3B (2q33.3)KLF7 (2q33.3) / WDR48 (3p22.2)MAP4 (3p21.31) / KLF7 (2q33.3)
TSPAN2 (1p13.2) / KLF7 (2q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(2;2)(q33;q33) KLF7/PARD3B


External links

Nomenclature
HGNC (Hugo)KLF7   6350
Cards
Entrez_Gene (NCBI)KLF7  8609  Kruppel like factor 7
AliasesUKLF
GeneCards (Weizmann)KLF7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr2:207074138-207166016 [Contig_View]  KLF7 [Vega]
TCGA cBioPortalKLF7
AceView (NCBI)KLF7
Genatlas (Paris)KLF7
WikiGenes8609
SOURCE (Princeton)KLF7
Genetics Home Reference (NIH)KLF7
Genomic and cartography
GoldenPath hg38 (UCSC)KLF7  -     chr2:207074138-207166016 -  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLF7  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblKLF7 - 2q33.3 [CytoView hg19]  KLF7 - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBIKLF7 [Mapview hg19]  KLF7 [Mapview hg38]
OMIM604865   
Gene and transcription
Genbank (Entrez)AB015132 AK000969 AK027371 AK297312 AK314439
RefSeq transcript (Entrez)NM_001270942 NM_001270943 NM_001270944 NM_003709
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLF7
Cluster EST : UnigeneHs.471221 [ NCBI ]
CGAP (NCI)Hs.471221
Gene ExpressionKLF7 [ NCBI-GEO ]   KLF7 [ EBI - ARRAY_EXPRESS ]   KLF7 [ SEEK ]   KLF7 [ MEM ]
Gene Expression Viewer (FireBrowse)KLF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8609
GTEX Portal (Tissue expression)KLF7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75840   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75840  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75840
Splice isoforms : SwissVarO75840
PhosPhoSitePlusO75840
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)KLF7
DMDM Disease mutations8609
Blocks (Seattle)KLF7
SuperfamilyO75840
Peptide AtlasO75840
IPIIPI00027176   IPI00925975   IPI00925156   IPI00924494   IPI00925563   IPI00925554   IPI00925780   IPI00926385   
Protein Interaction databases
DIP (DOE-UCLA)O75840
IntAct (EBI)O75840
BioGRIDKLF7
STRING (EMBL)KLF7
ZODIACKLF7
Ontologies - Pathways
QuickGOO75840
Ontology : AmiGO###############################################################################################################################################################################################################################################################                      
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                      
NDEx NetworkKLF7
Atlas of Cancer Signalling NetworkKLF7
Wikipedia pathwaysKLF7
Orthology - Evolution
OrthoDB8609
Phylogenetic Trees/Animal Genes : TreeFamKLF7
HOVERGENO75840
HOGENOMO75840
Homologs : HomoloGeneKLF7
Homology/Alignments : Family Browser (UCSC)KLF7
Gene fusions - Rearrangements
Fusion : QuiverKLF7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF7
dbVarKLF7
ClinVarKLF7
1000_GenomesKLF7 
Exome Variant ServerKLF7
Genetic variants : HAPMAP8609
Genomic Variants (DGV)KLF7 [DGVbeta]
DECIPHERKLF7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLF7 
Mutations
ICGC Data PortalKLF7 
TCGA Data PortalKLF7 
Broad Tumor PortalKLF7
OASIS PortalKLF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLF7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLF7
BioMutasearch KLF7
DgiDB (Drug Gene Interaction Database)KLF7
DoCM (Curated mutations)KLF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLF7 (select a term)
intoGenKLF7
Cancer3DKLF7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604865   
Orphanet
DisGeNETKLF7
MedgenKLF7
Genetic Testing Registry KLF7
NextProtO75840 [Medical]
TSGene8609
GENETestsKLF7
Target ValidationKLF7
Huge Navigator KLF7 [HugePedia]
snp3D : Map Gene to Disease8609
BioCentury BCIQKLF7
ClinGenKLF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8609
Chemical/Pharm GKB GenePA30140
Clinical trialKLF7
Miscellaneous
canSAR (ICR)KLF7 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLF7
EVEXKLF7
GoPubMedKLF7
iHOPKLF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jun 22 16:32:18 CEST 2018

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