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KLF9 (Kruppel like factor 9)

Identity

Alias_namesBTEB1
basic transcription element binding protein 1
Other aliasBTEB
HGNC (Hugo) KLF9
LocusID (NCBI) 687
Atlas_Id 50229
Location 9q21.12  [Link to chromosome band 9q21]
Location_base_pair Starts at 70384597 and ends at 70414657 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLF9   1123
Cards
Entrez_Gene (NCBI)KLF9  687  Kruppel like factor 9
AliasesBTEB; BTEB1
GeneCards (Weizmann)KLF9
Ensembl hg19 (Hinxton)ENSG00000119138 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119138 [Gene_View]  chr9:70384597-70414657 [Contig_View]  KLF9 [Vega]
ICGC DataPortalENSG00000119138
TCGA cBioPortalKLF9
AceView (NCBI)KLF9
Genatlas (Paris)KLF9
WikiGenes687
SOURCE (Princeton)KLF9
Genetics Home Reference (NIH)KLF9
Genomic and cartography
GoldenPath hg38 (UCSC)KLF9  -     chr9:70384597-70414657 -  9q21.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLF9  -     9q21.12   [Description]    (hg19-Feb_2009)
EnsemblKLF9 - 9q21.12 [CytoView hg19]  KLF9 - 9q21.12 [CytoView hg38]
Mapping of homologs : NCBIKLF9 [Mapview hg19]  KLF9 [Mapview hg38]
OMIM602902   
Gene and transcription
Genbank (Entrez)AB451404 AI458659 AI693223 AK313631 BC069431
RefSeq transcript (Entrez)NM_001206
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLF9
Cluster EST : UnigeneHs.602267 [ NCBI ]
CGAP (NCI)Hs.602267
Alternative Splicing GalleryENSG00000119138
Gene ExpressionKLF9 [ NCBI-GEO ]   KLF9 [ EBI - ARRAY_EXPRESS ]   KLF9 [ SEEK ]   KLF9 [ MEM ]
Gene Expression Viewer (FireBrowse)KLF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)687
GTEX Portal (Tissue expression)KLF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13886   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13886  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13886
Splice isoforms : SwissVarQ13886
PhosPhoSitePlusQ13886
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)KLF9
DMDM Disease mutations687
Blocks (Seattle)KLF9
SuperfamilyQ13886
Human Protein AtlasENSG00000119138
Peptide AtlasQ13886
HPRD04211
IPIIPI00015932   IPI00979445   
Protein Interaction databases
DIP (DOE-UCLA)Q13886
IntAct (EBI)Q13886
FunCoupENSG00000119138
BioGRIDKLF9
STRING (EMBL)KLF9
ZODIACKLF9
Ontologies - Pathways
QuickGOQ13886
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  circadian rhythm  negative regulation of keratinocyte proliferation  metal ion binding  cellular response to cortisol stimulus  cellular response to thyroid hormone stimulus  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  circadian rhythm  negative regulation of keratinocyte proliferation  metal ion binding  cellular response to cortisol stimulus  cellular response to thyroid hormone stimulus  
NDEx NetworkKLF9
Atlas of Cancer Signalling NetworkKLF9
Wikipedia pathwaysKLF9
Orthology - Evolution
OrthoDB687
GeneTree (enSembl)ENSG00000119138
Phylogenetic Trees/Animal Genes : TreeFamKLF9
HOVERGENQ13886
HOGENOMQ13886
Homologs : HomoloGeneKLF9
Homology/Alignments : Family Browser (UCSC)KLF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLF9
dbVarKLF9
ClinVarKLF9
1000_GenomesKLF9 
Exome Variant ServerKLF9
ExAC (Exome Aggregation Consortium)KLF9 (select the gene name)
Genetic variants : HAPMAP687
Genomic Variants (DGV)KLF9 [DGVbeta]
DECIPHERKLF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLF9 
Mutations
ICGC Data PortalKLF9 
TCGA Data PortalKLF9 
Broad Tumor PortalKLF9
OASIS PortalKLF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLF9
DgiDB (Drug Gene Interaction Database)KLF9
DoCM (Curated mutations)KLF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLF9 (select a term)
intoGenKLF9
Cancer3DKLF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602902   
Orphanet
MedgenKLF9
Genetic Testing Registry KLF9
NextProtQ13886 [Medical]
TSGene687
GENETestsKLF9
Target ValidationKLF9
Huge Navigator KLF9 [HugePedia]
snp3D : Map Gene to Disease687
BioCentury BCIQKLF9
ClinGenKLF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD687
Chemical/Pharm GKB GenePA25444
Clinical trialKLF9
Miscellaneous
canSAR (ICR)KLF9 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLF9
EVEXKLF9
GoPubMedKLF9
iHOPKLF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:14:39 CEST 2017

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