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KLHDC4 (kelch domain containing 4)

Identity

Alias_symbol (synonym)DKFZp434G0522
Other alias-
HGNC (Hugo) KLHDC4
LocusID (NCBI) 54758
Atlas_Id 55894
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 87741418 and ends at 87799598 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FAHD1 (16p13.3) / KLHDC4 (16q24.2)KLHDC4 (16q24.2) / CTGF (6q23.2)KLHDC4 (16q24.2) / SPG7 (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLHDC4   25272
Cards
Entrez_Gene (NCBI)KLHDC4  54758  kelch domain containing 4
Aliases
GeneCards (Weizmann)KLHDC4
Ensembl hg19 (Hinxton)ENSG00000104731 [Gene_View]  chr16:87741418-87799598 [Contig_View]  KLHDC4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104731 [Gene_View]  chr16:87741418-87799598 [Contig_View]  KLHDC4 [Vega]
ICGC DataPortalENSG00000104731
TCGA cBioPortalKLHDC4
AceView (NCBI)KLHDC4
Genatlas (Paris)KLHDC4
WikiGenes54758
SOURCE (Princeton)KLHDC4
Genetics Home Reference (NIH)KLHDC4
Genomic and cartography
GoldenPath hg19 (UCSC)KLHDC4  -     chr16:87741418-87799598 -  16q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLHDC4  -     16q24.2   [Description]    (hg38-Dec_2013)
EnsemblKLHDC4 - 16q24.2 [CytoView hg19]  KLHDC4 - 16q24.2 [CytoView hg38]
Mapping of homologs : NCBIKLHDC4 [Mapview hg19]  KLHDC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001742 AK023986 AK024496 AK057211 AK092895
RefSeq transcript (Entrez)NM_001184854 NM_001184856 NM_017566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLHDC4
Cluster EST : UnigeneHs.123450 [ NCBI ]
CGAP (NCI)Hs.123450
Alternative Splicing GalleryENSG00000104731
Gene ExpressionKLHDC4 [ NCBI-GEO ]   KLHDC4 [ EBI - ARRAY_EXPRESS ]   KLHDC4 [ SEEK ]   KLHDC4 [ MEM ]
Gene Expression Viewer (FireBrowse)KLHDC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54758
GTEX Portal (Tissue expression)KLHDC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBB5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBB5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBB5
Splice isoforms : SwissVarQ8TBB5
PhosPhoSitePlusQ8TBB5
Domains : Interpro (EBI)Kelch-typ_b-propeller    Kelch_2   
Domain families : Pfam (Sanger)Kelch_2 (PF07646)   
Domain families : Pfam (NCBI)pfam07646   
Conserved Domain (NCBI)KLHDC4
DMDM Disease mutations54758
Blocks (Seattle)KLHDC4
SuperfamilyQ8TBB5
Human Protein AtlasENSG00000104731
Peptide AtlasQ8TBB5
HPRD11180
IPIIPI00152182   IPI00642250   IPI00304958   IPI00297861   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBB5
IntAct (EBI)Q8TBB5
FunCoupENSG00000104731
BioGRIDKLHDC4
STRING (EMBL)KLHDC4
ZODIACKLHDC4
Ontologies - Pathways
QuickGOQ8TBB5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkKLHDC4
Atlas of Cancer Signalling NetworkKLHDC4
Wikipedia pathwaysKLHDC4
Orthology - Evolution
OrthoDB54758
GeneTree (enSembl)ENSG00000104731
Phylogenetic Trees/Animal Genes : TreeFamKLHDC4
HOVERGENQ8TBB5
HOGENOMQ8TBB5
Homologs : HomoloGeneKLHDC4
Homology/Alignments : Family Browser (UCSC)KLHDC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLHDC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLHDC4
dbVarKLHDC4
ClinVarKLHDC4
1000_GenomesKLHDC4 
Exome Variant ServerKLHDC4
ExAC (Exome Aggregation Consortium)KLHDC4 (select the gene name)
Genetic variants : HAPMAP54758
Genomic Variants (DGV)KLHDC4 [DGVbeta]
DECIPHER (Syndromes)16:87741418-87799598  ENSG00000104731
CONAN: Copy Number AnalysisKLHDC4 
Mutations
ICGC Data PortalKLHDC4 
TCGA Data PortalKLHDC4 
Broad Tumor PortalKLHDC4
OASIS PortalKLHDC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLHDC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLHDC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLHDC4
DgiDB (Drug Gene Interaction Database)KLHDC4
DoCM (Curated mutations)KLHDC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLHDC4 (select a term)
intoGenKLHDC4
Cancer3DKLHDC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKLHDC4
Genetic Testing Registry KLHDC4
NextProtQ8TBB5 [Medical]
TSGene54758
GENETestsKLHDC4
Huge Navigator KLHDC4 [HugePedia]
snp3D : Map Gene to Disease54758
BioCentury BCIQKLHDC4
ClinGenKLHDC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54758
Chemical/Pharm GKB GenePA134914472
Clinical trialKLHDC4
Miscellaneous
canSAR (ICR)KLHDC4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLHDC4
EVEXKLHDC4
GoPubMedKLHDC4
iHOPKLHDC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:03 CET 2017

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