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KLHDC7A (kelch domain containing 7A)

Identity

Alias (NCBI)-
HGNC (Hugo) KLHDC7A
HGNC Alias symbFLJ38753
LocusID (NCBI) 127707
Atlas_Id 64956
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 18480930 and ends at 18485986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)KLHDC7A   26791
Cards
Entrez_Gene (NCBI)KLHDC7A    kelch domain containing 7A
Aliases
GeneCards (Weizmann)KLHDC7A
Ensembl hg19 (Hinxton)ENSG00000179023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179023 [Gene_View]  ENSG00000179023 [Sequence]  chr1:18480930-18485986 [Contig_View]  KLHDC7A [Vega]
ICGC DataPortalENSG00000179023
TCGA cBioPortalKLHDC7A
AceView (NCBI)KLHDC7A
Genatlas (Paris)KLHDC7A
SOURCE (Princeton)KLHDC7A
Genetics Home Reference (NIH)KLHDC7A
Genomic and cartography
GoldenPath hg38 (UCSC)KLHDC7A  -     chr1:18480930-18485986 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLHDC7A  -     1p36.13   [Description]    (hg19-Feb_2009)
GoldenPathKLHDC7A - 1p36.13 [CytoView hg19]  KLHDC7A - 1p36.13 [CytoView hg38]
ImmunoBaseENSG00000179023
genome Data Viewer NCBIKLHDC7A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056173 AK096072 BC101498 BC101500 BC151205
RefSeq transcript (Entrez)NM_152375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLHDC7A
Alternative Splicing GalleryENSG00000179023
Gene ExpressionKLHDC7A [ NCBI-GEO ]   KLHDC7A [ EBI - ARRAY_EXPRESS ]   KLHDC7A [ SEEK ]   KLHDC7A [ MEM ]
Gene Expression Viewer (FireBrowse)KLHDC7A [ Firebrowse - Broad ]
GenevisibleExpression of KLHDC7A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127707
GTEX Portal (Tissue expression)KLHDC7A
Human Protein AtlasENSG00000179023-KLHDC7A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VTJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VTJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VTJ3
Splice isoforms : SwissVarQ5VTJ3
PhosPhoSitePlusQ5VTJ3
Domains : Interpro (EBI)Kelch-typ_b-propeller    Kelch_1   
Domain families : Pfam (Sanger)Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam01344   
Domain families : Smart (EMBL)Kelch (SM00612)  
Conserved Domain (NCBI)KLHDC7A
Blocks (Seattle)KLHDC7A
SuperfamilyQ5VTJ3
Human Protein Atlas [tissue]ENSG00000179023-KLHDC7A [tissue]
Peptide AtlasQ5VTJ3
HPRD08246
IPIIPI00167617   IPI01013666   
Protein Interaction databases
DIP (DOE-UCLA)Q5VTJ3
IntAct (EBI)Q5VTJ3
BioGRIDKLHDC7A
STRING (EMBL)KLHDC7A
ZODIACKLHDC7A
Ontologies - Pathways
QuickGOQ5VTJ3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkKLHDC7A
Atlas of Cancer Signalling NetworkKLHDC7A
Wikipedia pathwaysKLHDC7A
Orthology - Evolution
OrthoDB127707
GeneTree (enSembl)ENSG00000179023
Phylogenetic Trees/Animal Genes : TreeFamKLHDC7A
HOGENOMQ5VTJ3
Homologs : HomoloGeneKLHDC7A
Homology/Alignments : Family Browser (UCSC)KLHDC7A
Gene fusions - Rearrangements
Fusion : QuiverKLHDC7A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLHDC7A [hg38]
dbVarKLHDC7A
ClinVarKLHDC7A
MonarchKLHDC7A
1000_GenomesKLHDC7A 
Exome Variant ServerKLHDC7A
GNOMAD BrowserENSG00000179023
Varsome BrowserKLHDC7A
Genomic Variants (DGV)KLHDC7A [DGVbeta]
DECIPHERKLHDC7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLHDC7A 
Mutations
ICGC Data PortalKLHDC7A 
TCGA Data PortalKLHDC7A 
Broad Tumor PortalKLHDC7A
OASIS PortalKLHDC7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLHDC7A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKLHDC7A
Mutations and Diseases : HGMDKLHDC7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLHDC7A
DgiDB (Drug Gene Interaction Database)KLHDC7A
DoCM (Curated mutations)KLHDC7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLHDC7A (select a term)
intoGenKLHDC7A
Cancer3DKLHDC7A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKLHDC7A
MedgenKLHDC7A
Genetic Testing Registry KLHDC7A
NextProtQ5VTJ3 [Medical]
GENETestsKLHDC7A
Target ValidationKLHDC7A
Huge Navigator KLHDC7A [HugePedia]
ClinGenKLHDC7A
Clinical trials, drugs, therapy
MyCancerGenomeKLHDC7A
Protein Interactions : CTD
Pharm GKB GenePA142671581
Clinical trialKLHDC7A
Miscellaneous
canSAR (ICR)KLHDC7A (select the gene name)
HarmonizomeKLHDC7A
DataMed IndexKLHDC7A
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLHDC7A
EVEXKLHDC7A
GoPubMedKLHDC7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:58:52 CET 2020

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