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KLHDC9 (kelch domain containing 9)

Identity

Alias_symbol (synonym)KARCA1
Other alias
HGNC (Hugo) KLHDC9
LocusID (NCBI) 126823
Atlas_Id 64957
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161098391 and ends at 161100348 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF333 (19p13.12) / KLHDC9 (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLHDC9   28489
Cards
Entrez_Gene (NCBI)KLHDC9  126823  kelch domain containing 9
AliasesKARCA1
GeneCards (Weizmann)KLHDC9
Ensembl hg19 (Hinxton)ENSG00000162755 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162755 [Gene_View]  chr1:161098391-161100348 [Contig_View]  KLHDC9 [Vega]
ICGC DataPortalENSG00000162755
TCGA cBioPortalKLHDC9
AceView (NCBI)KLHDC9
Genatlas (Paris)KLHDC9
WikiGenes126823
SOURCE (Princeton)KLHDC9
Genetics Home Reference (NIH)KLHDC9
Genomic and cartography
GoldenPath hg38 (UCSC)KLHDC9  -     chr1:161098391-161100348 +  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLHDC9  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblKLHDC9 - 1q23.3 [CytoView hg19]  KLHDC9 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIKLHDC9 [Mapview hg19]  KLHDC9 [Mapview hg38]
OMIM617375   
Gene and transcription
Genbank (Entrez)AK093268 AY601914 BC022077 BC032482 BC066896
RefSeq transcript (Entrez)NM_001007255 NM_001007256 NM_152366
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLHDC9
Cluster EST : UnigeneHs.507290 [ NCBI ]
CGAP (NCI)Hs.507290
Alternative Splicing GalleryENSG00000162755
Gene ExpressionKLHDC9 [ NCBI-GEO ]   KLHDC9 [ EBI - ARRAY_EXPRESS ]   KLHDC9 [ SEEK ]   KLHDC9 [ MEM ]
Gene Expression Viewer (FireBrowse)KLHDC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126823
GTEX Portal (Tissue expression)KLHDC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEP7
Splice isoforms : SwissVarQ8NEP7
PhosPhoSitePlusQ8NEP7
Domains : Interpro (EBI)Gal_Oxase/kelch_b-propeller    Kelch-typ_b-propeller   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KLHDC9
DMDM Disease mutations126823
Blocks (Seattle)KLHDC9
SuperfamilyQ8NEP7
Human Protein AtlasENSG00000162755
Peptide AtlasQ8NEP7
HPRD13751
IPIIPI00479556   IPI00449308   IPI00166846   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEP7
IntAct (EBI)Q8NEP7
FunCoupENSG00000162755
BioGRIDKLHDC9
STRING (EMBL)KLHDC9
ZODIACKLHDC9
Ontologies - Pathways
QuickGOQ8NEP7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKLHDC9
Atlas of Cancer Signalling NetworkKLHDC9
Wikipedia pathwaysKLHDC9
Orthology - Evolution
OrthoDB126823
GeneTree (enSembl)ENSG00000162755
Phylogenetic Trees/Animal Genes : TreeFamKLHDC9
HOVERGENQ8NEP7
HOGENOMQ8NEP7
Homologs : HomoloGeneKLHDC9
Homology/Alignments : Family Browser (UCSC)KLHDC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLHDC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLHDC9
dbVarKLHDC9
ClinVarKLHDC9
1000_GenomesKLHDC9 
Exome Variant ServerKLHDC9
ExAC (Exome Aggregation Consortium)KLHDC9 (select the gene name)
Genetic variants : HAPMAP126823
Genomic Variants (DGV)KLHDC9 [DGVbeta]
DECIPHERKLHDC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLHDC9 
Mutations
ICGC Data PortalKLHDC9 
TCGA Data PortalKLHDC9 
Broad Tumor PortalKLHDC9
OASIS PortalKLHDC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLHDC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLHDC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLHDC9
DgiDB (Drug Gene Interaction Database)KLHDC9
DoCM (Curated mutations)KLHDC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLHDC9 (select a term)
intoGenKLHDC9
Cancer3DKLHDC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617375   
Orphanet
MedgenKLHDC9
Genetic Testing Registry KLHDC9
NextProtQ8NEP7 [Medical]
TSGene126823
GENETestsKLHDC9
Target ValidationKLHDC9
Huge Navigator KLHDC9 [HugePedia]
snp3D : Map Gene to Disease126823
BioCentury BCIQKLHDC9
ClinGenKLHDC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126823
Chemical/Pharm GKB GenePA162393459
Clinical trialKLHDC9
Miscellaneous
canSAR (ICR)KLHDC9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLHDC9
EVEXKLHDC9
GoPubMedKLHDC9
iHOPKLHDC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:00 CEST 2017

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