Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KLHL21 (kelch-like family member 21)

Identity

Other names-
HGNC (Hugo) KLHL21
LocusID (NCBI) 9903
Location 1p36.31
Location_base_pair Starts at 6650784 and ends at 6662929 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KLHL21   29041
Cards
Entrez_Gene (NCBI)KLHL21  9903  kelch-like family member 21
GeneCards (Weizmann)KLHL21
Ensembl (Hinxton)ENSG00000162413 [Gene_View]  chr1:6650784-6662929 [Contig_View]  KLHL21 [Vega]
AceView (NCBI)KLHL21
Genatlas (Paris)KLHL21
WikiGenes9903
SOURCE (Princeton)NM_014851
Genomic and cartography
GoldenPath (UCSC)KLHL21  -  1p36.31   chr1:6650784-6662929 -  1p36.31   [Description]    (hg19-Feb_2009)
EnsemblKLHL21 - 1p36.31 [CytoView]
Mapping of homologs : NCBIKLHL21 [Mapview]
Gene and transcription
Genbank (Entrez)AB007938 AK057164 AK075305 AK090472 AK307564
RefSeq transcript (Entrez)NM_014851
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_021937 NW_001838523 NW_004929289
Consensus coding sequences : CCDS (NCBI)KLHL21
Cluster EST : UnigeneHs.7764 [ NCBI ]
CGAP (NCI)Hs.7764
Alternative Splicing : Fast-db (Paris)GSHG0001716
Alternative Splicing GalleryENSG00000162413
Gene ExpressionKLHL21 [ NCBI-GEO ]     KLHL21 [ SEEK ]   KLHL21 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJP4 (Uniprot)
NextProtQ9UJP4  [Medical]
With graphics : InterProQ9UJP4
Splice isoforms : SwissVarQ9UJP4 (Swissvar)
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Gal_Oxidase_b-propeller    Kelch-like_gigaxonin    Kelch_1   
Related proteins : CluSTrQ9UJP4
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
DMDM Disease mutations9903
Blocks (Seattle)Q9UJP4
Human Protein AtlasENSG00000162413
Peptide AtlasQ9UJP4
HPRD17239
IPIIPI00402021   IPI00006994   IPI01009309   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJP4
IntAct (EBI)Q9UJP4
FunCoupENSG00000162413
BioGRIDKLHL21
InParanoidQ9UJP4
Interologous Interaction database Q9UJP4
IntegromeDBKLHL21
STRING (EMBL)KLHL21
Ontologies - Pathways
Ontology : AmiGOubiquitin-protein ligase activity  cytoplasm  polar microtubule  mitosis  protein ubiquitination  Cul3-RING ubiquitin ligase complex  regulation of cytokinesis  chromosome passenger complex localization to spindle midzone  cell division  
Ontology : EGO-EBIubiquitin-protein ligase activity  cytoplasm  polar microtubule  mitosis  protein ubiquitination  Cul3-RING ubiquitin ligase complex  regulation of cytokinesis  chromosome passenger complex localization to spindle midzone  cell division  
REACTOMEKLHL21
Protein Interaction DatabaseKLHL21
Wikipedia pathwaysKLHL21
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KLHL21
SNP (GeneSNP Utah)KLHL21
SNP : HGBaseKLHL21
Genetic variants : HAPMAPKLHL21
1000_GenomesKLHL21 
ICGC programENSG00000162413 
Somatic Mutations in Cancer : COSMICKLHL21 
CONAN: Copy Number AnalysisKLHL21 
Mutations and Diseases : HGMDKLHL21
OMIM
GENETestsKLHL21
Disease Genetic AssociationKLHL21
Huge Navigator KLHL21 [HugePedia]  KLHL21 [HugeCancerGEM]
Genomic VariantsKLHL21  KLHL21 [DGVbeta]
Exome VariantKLHL21
dbVarKLHL21
ClinVarKLHL21
snp3D : Map Gene to Disease9903
General knowledge
Homologs : HomoloGeneKLHL21
Homology/Alignments : Family Browser (UCSC)KLHL21
Phylogenetic Trees/Animal Genes : TreeFamKLHL21
Chemical/Protein Interactions : CTD9903
Chemical/Pharm GKB GenePA134989246
Clinical trialKLHL21
Cancer Resource (Charite)ENSG00000162413
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineKLHL21
iHOPKLHL21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:08:06 CEST 2014

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