Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KLHL28 (kelch-like family member 28)

Identity

Alias_namesBTBD5
BTB (POZ) domain containing 5
kelch-like 28 (Drosophila)
Alias_symbol (synonym)FLJ20081
Other alias
HGNC (Hugo) KLHL28
LocusID (NCBI) 54813
Atlas_Id 64971
Location 14q21.2  [Link to chromosome band 14q21]
Location_base_pair Starts at 45393513 and ends at 45430335 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NCOA2 (8q13.3) / KLHL28 (14q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLHL28   19741
Cards
Entrez_Gene (NCBI)KLHL28  54813  kelch-like family member 28
AliasesBTBD5
GeneCards (Weizmann)KLHL28
Ensembl hg19 (Hinxton)ENSG00000179454 [Gene_View]  chr14:45393513-45430335 [Contig_View]  KLHL28 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179454 [Gene_View]  chr14:45393513-45430335 [Contig_View]  KLHL28 [Vega]
ICGC DataPortalENSG00000179454
TCGA cBioPortalKLHL28
AceView (NCBI)KLHL28
Genatlas (Paris)KLHL28
WikiGenes54813
SOURCE (Princeton)KLHL28
Genetics Home Reference (NIH)KLHL28
Genomic and cartography
GoldenPath hg19 (UCSC)KLHL28  -     chr14:45393513-45430335 -  14q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLHL28  -     14q21.2   [Description]    (hg38-Dec_2013)
EnsemblKLHL28 - 14q21.2 [CytoView hg19]  KLHL28 - 14q21.2 [CytoView hg38]
Mapping of homologs : NCBIKLHL28 [Mapview hg19]  KLHL28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000088 AK225183 AK225211 AK289855 AL713035
RefSeq transcript (Entrez)NM_001308112 NM_017658
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)KLHL28
Cluster EST : UnigeneHs.550906 [ NCBI ]
CGAP (NCI)Hs.550906
Alternative Splicing GalleryENSG00000179454
Gene ExpressionKLHL28 [ NCBI-GEO ]   KLHL28 [ EBI - ARRAY_EXPRESS ]   KLHL28 [ SEEK ]   KLHL28 [ MEM ]
Gene Expression Viewer (FireBrowse)KLHL28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54813
GTEX Portal (Tissue expression)KLHL28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXS3
Splice isoforms : SwissVarQ9NXS3
PhosPhoSitePlusQ9NXS3
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB-kelch_protein    BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Gal_Oxase/kelch_b-propeller    Gal_Oxidase_b-propeller    Kelch_1    KLHL28   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)KLHL28
DMDM Disease mutations54813
Blocks (Seattle)KLHL28
SuperfamilyQ9NXS3
Human Protein AtlasENSG00000179454
Peptide AtlasQ9NXS3
HPRD12539
IPIIPI00165003   IPI00884322   IPI01025733   IPI01026011   IPI00409615   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXS3
IntAct (EBI)Q9NXS3
FunCoupENSG00000179454
BioGRIDKLHL28
STRING (EMBL)KLHL28
ZODIACKLHL28
Ontologies - Pathways
QuickGOQ9NXS3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKLHL28
Atlas of Cancer Signalling NetworkKLHL28
Wikipedia pathwaysKLHL28
Orthology - Evolution
OrthoDB54813
GeneTree (enSembl)ENSG00000179454
Phylogenetic Trees/Animal Genes : TreeFamKLHL28
HOVERGENQ9NXS3
HOGENOMQ9NXS3
Homologs : HomoloGeneKLHL28
Homology/Alignments : Family Browser (UCSC)KLHL28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLHL28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLHL28
dbVarKLHL28
ClinVarKLHL28
1000_GenomesKLHL28 
Exome Variant ServerKLHL28
ExAC (Exome Aggregation Consortium)KLHL28 (select the gene name)
Genetic variants : HAPMAP54813
Genomic Variants (DGV)KLHL28 [DGVbeta]
DECIPHER (Syndromes)14:45393513-45430335  ENSG00000179454
CONAN: Copy Number AnalysisKLHL28 
Mutations
ICGC Data PortalKLHL28 
TCGA Data PortalKLHL28 
Broad Tumor PortalKLHL28
OASIS PortalKLHL28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLHL28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLHL28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLHL28
DgiDB (Drug Gene Interaction Database)KLHL28
DoCM (Curated mutations)KLHL28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLHL28 (select a term)
intoGenKLHL28
Cancer3DKLHL28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKLHL28
Genetic Testing Registry KLHL28
NextProtQ9NXS3 [Medical]
TSGene54813
GENETestsKLHL28
Huge Navigator KLHL28 [HugePedia]
snp3D : Map Gene to Disease54813
BioCentury BCIQKLHL28
ClinGenKLHL28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54813
Chemical/Pharm GKB GenePA162393472
Clinical trialKLHL28
Miscellaneous
canSAR (ICR)KLHL28 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLHL28
EVEXKLHL28
GoPubMedKLHL28
iHOPKLHL28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:02 CET 2017

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