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KLHL38 (kelch like family member 38)

Identity

Alias_nameskelch-like 38 (Drosophila)
Alias_symbol (synonym)C8ORFK36
Other alias
HGNC (Hugo) KLHL38
LocusID (NCBI) 340359
Atlas_Id 64980
Location 8q24.13  [Link to chromosome band 8q24]
Location_base_pair Starts at 123645675 and ends at 123652950 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLHL38   34435
Cards
Entrez_Gene (NCBI)KLHL38  340359  kelch like family member 38
AliasesC8ORFK36
GeneCards (Weizmann)KLHL38
Ensembl hg19 (Hinxton)ENSG00000175946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175946 [Gene_View]  chr8:123645675-123652950 [Contig_View]  KLHL38 [Vega]
ICGC DataPortalENSG00000175946
TCGA cBioPortalKLHL38
AceView (NCBI)KLHL38
Genatlas (Paris)KLHL38
WikiGenes340359
SOURCE (Princeton)KLHL38
Genetics Home Reference (NIH)KLHL38
Genomic and cartography
GoldenPath hg38 (UCSC)KLHL38  -     chr8:123645675-123652950 -  8q24.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLHL38  -     8q24.13   [Description]    (hg19-Feb_2009)
EnsemblKLHL38 - 8q24.13 [CytoView hg19]  KLHL38 - 8q24.13 [CytoView hg38]
Mapping of homologs : NCBIKLHL38 [Mapview hg19]  KLHL38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB196636 BC127886
RefSeq transcript (Entrez)NM_001081675
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLHL38
Cluster EST : UnigeneHs.450252 [ NCBI ]
CGAP (NCI)Hs.450252
Alternative Splicing GalleryENSG00000175946
Gene ExpressionKLHL38 [ NCBI-GEO ]   KLHL38 [ EBI - ARRAY_EXPRESS ]   KLHL38 [ SEEK ]   KLHL38 [ MEM ]
Gene Expression Viewer (FireBrowse)KLHL38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340359
GTEX Portal (Tissue expression)KLHL38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2WGJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2WGJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2WGJ6
Splice isoforms : SwissVarQ2WGJ6
PhosPhoSitePlusQ2WGJ6
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BACK    BTB-kelch_protein    BTB/POZ_dom    Kelch-typ_b-propeller    Kelch_1    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BACK (PF07707)    BTB (PF00651)    Kelch_1 (PF01344)   
Domain families : Pfam (NCBI)pfam07707    pfam00651    pfam01344   
Domain families : Smart (EMBL)BACK (SM00875)  BTB (SM00225)  Kelch (SM00612)  
Conserved Domain (NCBI)KLHL38
DMDM Disease mutations340359
Blocks (Seattle)KLHL38
SuperfamilyQ2WGJ6
Human Protein AtlasENSG00000175946
Peptide AtlasQ2WGJ6
IPIIPI00248929   
Protein Interaction databases
DIP (DOE-UCLA)Q2WGJ6
IntAct (EBI)Q2WGJ6
FunCoupENSG00000175946
BioGRIDKLHL38
STRING (EMBL)KLHL38
ZODIACKLHL38
Ontologies - Pathways
QuickGOQ2WGJ6
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  protein ubiquitination  Cul3-RING ubiquitin ligase complex  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  protein ubiquitination  Cul3-RING ubiquitin ligase complex  
NDEx NetworkKLHL38
Atlas of Cancer Signalling NetworkKLHL38
Wikipedia pathwaysKLHL38
Orthology - Evolution
OrthoDB340359
GeneTree (enSembl)ENSG00000175946
Phylogenetic Trees/Animal Genes : TreeFamKLHL38
HOVERGENQ2WGJ6
HOGENOMQ2WGJ6
Homologs : HomoloGeneKLHL38
Homology/Alignments : Family Browser (UCSC)KLHL38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLHL38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLHL38
dbVarKLHL38
ClinVarKLHL38
1000_GenomesKLHL38 
Exome Variant ServerKLHL38
ExAC (Exome Aggregation Consortium)KLHL38 (select the gene name)
Genetic variants : HAPMAP340359
Genomic Variants (DGV)KLHL38 [DGVbeta]
DECIPHERKLHL38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLHL38 
Mutations
ICGC Data PortalKLHL38 
TCGA Data PortalKLHL38 
Broad Tumor PortalKLHL38
OASIS PortalKLHL38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLHL38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLHL38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLHL38
DgiDB (Drug Gene Interaction Database)KLHL38
DoCM (Curated mutations)KLHL38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLHL38 (select a term)
intoGenKLHL38
Cancer3DKLHL38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKLHL38
Genetic Testing Registry KLHL38
NextProtQ2WGJ6 [Medical]
TSGene340359
GENETestsKLHL38
Target ValidationKLHL38
Huge Navigator KLHL38 [HugePedia]
snp3D : Map Gene to Disease340359
BioCentury BCIQKLHL38
ClinGenKLHL38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340359
Chemical/Pharm GKB GenePA162393613
Clinical trialKLHL38
Miscellaneous
canSAR (ICR)KLHL38 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLHL38
EVEXKLHL38
GoPubMedKLHL38
iHOPKLHL38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:54:49 CEST 2017

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