Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KLKP1 (kallikrein pseudogene 1)

Identity

Alias_symbol (synonym)YKLK1
PsiKLK1
KLK31P
Other aliasKARMA
KRSP1
HGNC (Hugo) KLKP1
LocusID (NCBI) 606293
Atlas_Id 45852
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50882096 and ends at 50896398 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KLK4 (19q13.41) / KLKP1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLKP1   21260
Cards
Entrez_Gene (NCBI)KLKP1  606293  kallikrein pseudogene 1
AliasesKARMA; KLK31P; KRSP1; PsiKLK1; 
YKLK1
GeneCards (Weizmann)KLKP1
Ensembl hg19 (Hinxton)ENSG00000197588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197588 [Gene_View]  chr19:50882096-50896398 [Contig_View]  KLKP1 [Vega]
ICGC DataPortalENSG00000197588
TCGA cBioPortalKLKP1
AceView (NCBI)KLKP1
Genatlas (Paris)KLKP1
WikiGenes606293
SOURCE (Princeton)KLKP1
Genetics Home Reference (NIH)KLKP1
Genomic and cartography
GoldenPath hg38 (UCSC)KLKP1  -     chr19:50882096-50896398 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLKP1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblKLKP1 - 19q13.33 [CytoView hg19]  KLKP1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIKLKP1 [Mapview hg19]  KLKP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF355199 AF464754 AY533562 DQ086829 DQ211698
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLKP1
Cluster EST : UnigeneHs.643424 [ NCBI ]
CGAP (NCI)Hs.643424
Alternative Splicing GalleryENSG00000197588
Gene ExpressionKLKP1 [ NCBI-GEO ]   KLKP1 [ EBI - ARRAY_EXPRESS ]   KLKP1 [ SEEK ]   KLKP1 [ MEM ]
Gene Expression Viewer (FireBrowse)KLKP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)606293
GTEX Portal (Tissue expression)KLKP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ107X0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ107X0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ107X0
Splice isoforms : SwissVarQ107X0
PhosPhoSitePlusQ107X0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KLKP1
DMDM Disease mutations606293
Blocks (Seattle)KLKP1
SuperfamilyQ107X0
Human Protein AtlasENSG00000197588
Peptide AtlasQ107X0
IPIIPI00784447   
Protein Interaction databases
DIP (DOE-UCLA)Q107X0
IntAct (EBI)Q107X0
FunCoupENSG00000197588
BioGRIDKLKP1
STRING (EMBL)KLKP1
ZODIACKLKP1
Ontologies - Pathways
QuickGOQ107X0
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkKLKP1
Atlas of Cancer Signalling NetworkKLKP1
Wikipedia pathwaysKLKP1
Orthology - Evolution
OrthoDB606293
GeneTree (enSembl)ENSG00000197588
Phylogenetic Trees/Animal Genes : TreeFamKLKP1
HOVERGENQ107X0
HOGENOMQ107X0
Homologs : HomoloGeneKLKP1
Homology/Alignments : Family Browser (UCSC)KLKP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLKP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLKP1
dbVarKLKP1
ClinVarKLKP1
1000_GenomesKLKP1 
Exome Variant ServerKLKP1
ExAC (Exome Aggregation Consortium)KLKP1 (select the gene name)
Genetic variants : HAPMAP606293
Genomic Variants (DGV)KLKP1 [DGVbeta]
DECIPHERKLKP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLKP1 
Mutations
ICGC Data PortalKLKP1 
TCGA Data PortalKLKP1 
Broad Tumor PortalKLKP1
OASIS PortalKLKP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKLKP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLKP1
DgiDB (Drug Gene Interaction Database)KLKP1
DoCM (Curated mutations)KLKP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLKP1 (select a term)
intoGenKLKP1
Cancer3DKLKP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKLKP1
Genetic Testing Registry KLKP1
NextProtQ107X0 [Medical]
TSGene606293
GENETestsKLKP1
Target ValidationKLKP1
Huge Navigator KLKP1 [HugePedia]
snp3D : Map Gene to Disease606293
BioCentury BCIQKLKP1
ClinGenKLKP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD606293
Chemical/Pharm GKB GenePA142671578
Clinical trialKLKP1
Miscellaneous
canSAR (ICR)KLKP1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLKP1
EVEXKLKP1
GoPubMedKLKP1
iHOPKLKP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:57:13 CEST 2017

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