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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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KLRC1 (killer cell lectin-like receptor subfamily C, member 1)

Identity

Other namesCD159A
NKG2
NKG2A
HGNC (Hugo) KLRC1
LocusID (NCBI) 3821
Location 12p13.2
Location_base_pair Starts at 10598638 and ends at 10605979 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KLRC1   6374
Cards
Entrez_Gene (NCBI)KLRC1  3821  killer cell lectin-like receptor subfamily C, member 1
GeneCards (Weizmann)KLRC1
Ensembl hg19 (Hinxton)ENSG00000134545 [Gene_View]  chr12:10598638-10605979 [Contig_View]  KLRC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134545 [Gene_View]  chr12:10598638-10605979 [Contig_View]  KLRC1 [Vega]
ICGC DataPortalENSG00000134545
cBioPortalKLRC1
AceView (NCBI)KLRC1
Genatlas (Paris)KLRC1
WikiGenes3821
SOURCE (Princeton)KLRC1
Genomic and cartography
GoldenPath hg19 (UCSC)KLRC1  -     chr12:10598638-10605979 -  12p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KLRC1  -     12p13.2   [Description]    (hg38-Dec_2013)
EnsemblKLRC1 - 12p13.2 [CytoView hg19]  KLRC1 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIKLRC1 [Mapview hg19]  KLRC1 [Mapview hg38]
OMIM161555   
Gene and transcription
Genbank (Entrez)AF461812 AK310992 BC012550 BC053840 DB464226
RefSeq transcript (Entrez)NM_002259 NM_007328 NM_213657 NM_213658
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838052 NW_004929383
Consensus coding sequences : CCDS (NCBI)KLRC1
Cluster EST : UnigeneHs.512576 [ NCBI ]
CGAP (NCI)Hs.512576
Alternative Splicing : Fast-db (Paris)GSHG0007254
Alternative Splicing GalleryENSG00000134545
Gene ExpressionKLRC1 [ NCBI-GEO ]     KLRC1 [ SEEK ]   KLRC1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP26715 (Uniprot)
NextProtP26715  [Medical]
With graphics : InterProP26715
Splice isoforms : SwissVarP26715 (Swissvar)
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_fold   
Related proteins : CluSTrP26715
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
DMDM Disease mutations3821
Blocks (Seattle)P26715
PDB (SRS)2RMX    2YU7    3BDW    3CDG    3CII   
PDB (PDBSum)2RMX    2YU7    3BDW    3CDG    3CII   
PDB (IMB)2RMX    2YU7    3BDW    3CDG    3CII   
PDB (RSDB)2RMX    2YU7    3BDW    3CDG    3CII   
Human Protein AtlasENSG00000134545
Peptide AtlasP26715
HPRD01192
IPIIPI00001517   IPI00217274   IPI01010949   IPI00942572   
Protein Interaction databases
DIP (DOE-UCLA)P26715
IntAct (EBI)P26715
FunCoupENSG00000134545
BioGRIDKLRC1
IntegromeDBKLRC1
STRING (EMBL)KLRC1
Ontologies - Pathways
QuickGOP26715
Ontology : AmiGOtransmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  carbohydrate binding  regulation of immune response  
Ontology : EGO-EBItransmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  carbohydrate binding  regulation of immune response  
Pathways : BIOCARTARas-Independent pathway in NK cell-mediated cytotoxicity [Genes]   
Pathways : KEGGAntigen processing and presentation    Natural killer cell mediated cytotoxicity    Graft-versus-host disease   
Protein Interaction DatabaseKLRC1
DoCM (Curated mutations)KLRC1
Wikipedia pathwaysKLRC1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKLRC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLRC1
dbVarKLRC1
ClinVarKLRC1
1000_GenomesKLRC1 
Exome Variant ServerKLRC1
SNP (GeneSNP Utah)KLRC1
SNP : HGBaseKLRC1
Genetic variants : HAPMAPKLRC1
Genomic Variants (DGV)KLRC1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000134545 
Somatic Mutations in Cancer : COSMICKLRC1 
CONAN: Copy Number AnalysisKLRC1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:10598638-10605979
Mutations and Diseases : HGMDKLRC1
OMIM161555   
MedgenKLRC1
NextProtP26715 [Medical]
GENETestsKLRC1
Disease Genetic AssociationKLRC1
Huge Navigator KLRC1 [HugePedia]  KLRC1 [HugeCancerGEM]
snp3D : Map Gene to Disease3821
DGIdb (Drug Gene Interaction db)KLRC1
General knowledge
Homologs : HomoloGeneKLRC1
Homology/Alignments : Family Browser (UCSC)KLRC1
Phylogenetic Trees/Animal Genes : TreeFamKLRC1
Chemical/Protein Interactions : CTD3821
Chemical/Pharm GKB GenePA30163
Clinical trialKLRC1
Cancer Resource (Charite)ENSG00000134545
Other databases
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
CoreMineKLRC1
GoPubMedKLRC1
iHOPKLRC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 16:29:06 CET 2015

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