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KLRC4 (killer cell lectin like receptor C4)

Identity

Alias_nameskiller cell lectin-like receptor subfamily C
Alias_symbol (synonym)NKG2-F
Other aliasNKG2F
HGNC (Hugo) KLRC4
LocusID (NCBI) 8302
Atlas_Id 41093
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10407384 and ends at 10409757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KLRC4 (12p13.2) / KLRK1 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLRC4   6377
Cards
Entrez_Gene (NCBI)KLRC4  8302  killer cell lectin like receptor C4
AliasesNKG2-F; NKG2F
GeneCards (Weizmann)KLRC4
Ensembl hg19 (Hinxton)ENSG00000183542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183542 [Gene_View]  chr12:10407384-10409757 [Contig_View]  KLRC4 [Vega]
ICGC DataPortalENSG00000183542
TCGA cBioPortalKLRC4
AceView (NCBI)KLRC4
Genatlas (Paris)KLRC4
WikiGenes8302
SOURCE (Princeton)KLRC4
Genetics Home Reference (NIH)KLRC4
Genomic and cartography
GoldenPath hg38 (UCSC)KLRC4  -     chr12:10407384-10409757 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLRC4  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblKLRC4 - 12p13.2 [CytoView hg19]  KLRC4 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIKLRC4 [Mapview hg19]  KLRC4 [Mapview hg38]
OMIM602893   
Gene and transcription
Genbank (Entrez)AF350018 AF350019 AJ001683 BC017784 DQ891978
RefSeq transcript (Entrez)NM_013431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLRC4
Cluster EST : UnigeneHs.721094 [ NCBI ]
CGAP (NCI)Hs.721094
Alternative Splicing GalleryENSG00000183542
Gene ExpressionKLRC4 [ NCBI-GEO ]   KLRC4 [ EBI - ARRAY_EXPRESS ]   KLRC4 [ SEEK ]   KLRC4 [ MEM ]
Gene Expression Viewer (FireBrowse)KLRC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8302
GTEX Portal (Tissue expression)KLRC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43908   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43908  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43908
Splice isoforms : SwissVarO43908
PhosPhoSitePlusO43908
Domains : Interpro (EBI)C-type_lectin-like/link    CTDL_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KLRC4
DMDM Disease mutations8302
Blocks (Seattle)KLRC4
SuperfamilyO43908
Human Protein AtlasENSG00000183542
Peptide AtlasO43908
HPRD16008
IPIIPI00307816   
Protein Interaction databases
DIP (DOE-UCLA)O43908
IntAct (EBI)O43908
FunCoupENSG00000183542
BioGRIDKLRC4
STRING (EMBL)KLRC4
ZODIACKLRC4
Ontologies - Pathways
QuickGOO43908
Ontology : AmiGOcellular defense response  integral component of membrane  
Ontology : EGO-EBIcellular defense response  integral component of membrane  
Pathways : BIOCARTARas-Independent pathway in NK cell-mediated cytotoxicity [Genes]   
Pathways : KEGGAntigen processing and presentation   
NDEx NetworkKLRC4
Atlas of Cancer Signalling NetworkKLRC4
Wikipedia pathwaysKLRC4
Orthology - Evolution
OrthoDB8302
GeneTree (enSembl)ENSG00000183542
Phylogenetic Trees/Animal Genes : TreeFamKLRC4
HOVERGENO43908
HOGENOMO43908
Homologs : HomoloGeneKLRC4
Homology/Alignments : Family Browser (UCSC)KLRC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLRC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLRC4
dbVarKLRC4
ClinVarKLRC4
1000_GenomesKLRC4 
Exome Variant ServerKLRC4
ExAC (Exome Aggregation Consortium)KLRC4 (select the gene name)
Genetic variants : HAPMAP8302
Genomic Variants (DGV)KLRC4 [DGVbeta]
DECIPHERKLRC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLRC4 
Mutations
ICGC Data PortalKLRC4 
TCGA Data PortalKLRC4 
Broad Tumor PortalKLRC4
OASIS PortalKLRC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLRC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKLRC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLRC4
DgiDB (Drug Gene Interaction Database)KLRC4
DoCM (Curated mutations)KLRC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLRC4 (select a term)
intoGenKLRC4
Cancer3DKLRC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602893   
Orphanet703   
MedgenKLRC4
Genetic Testing Registry KLRC4
NextProtO43908 [Medical]
TSGene8302
GENETestsKLRC4
Huge Navigator KLRC4 [HugePedia]
snp3D : Map Gene to Disease8302
BioCentury BCIQKLRC4
ClinGenKLRC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8302
Chemical/Pharm GKB GenePA30166
Clinical trialKLRC4
Miscellaneous
canSAR (ICR)KLRC4 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLRC4
EVEXKLRC4
GoPubMedKLRC4
iHOPKLRC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:21:51 CEST 2017

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