Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KLRC4 (killer cell lectin like receptor C4)

Identity

Alias (NCBI)NKG2-F
NKG2F
HGNC (Hugo) KLRC4
HGNC Alias symbNKG2-F
HGNC Previous namekiller cell lectin-like receptor subfamily C, member 4
LocusID (NCBI) 8302
Atlas_Id 41093
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10407384 and ends at 10409757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KLRC4 (12p13.2) / KLRK1 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)KLRC4   6377
Cards
Entrez_Gene (NCBI)KLRC4    killer cell lectin like receptor C4
AliasesNKG2-F; NKG2F
GeneCards (Weizmann)KLRC4
Ensembl hg19 (Hinxton)ENSG00000183542 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183542 [Gene_View]  ENSG00000183542 [Sequence]  chr12:10407384-10409757 [Contig_View]  KLRC4 [Vega]
ICGC DataPortalENSG00000183542
TCGA cBioPortalKLRC4
AceView (NCBI)KLRC4
Genatlas (Paris)KLRC4
SOURCE (Princeton)KLRC4
Genetics Home Reference (NIH)KLRC4
Genomic and cartography
GoldenPath hg38 (UCSC)KLRC4  -     chr12:10407384-10409757 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLRC4  -     12p13.2   [Description]    (hg19-Feb_2009)
GoldenPathKLRC4 - 12p13.2 [CytoView hg19]  KLRC4 - 12p13.2 [CytoView hg38]
ImmunoBaseENSG00000183542
Genome Data Viewer NCBIKLRC4 [Mapview hg19]  
OMIM602893   
Gene and transcription
Genbank (Entrez)AF350018 AF350019 AJ001683 BC017784 U96845
RefSeq transcript (Entrez)NM_013431
Consensus coding sequences : CCDS (NCBI)KLRC4
Gene ExpressionKLRC4 [ NCBI-GEO ]   KLRC4 [ EBI - ARRAY_EXPRESS ]   KLRC4 [ SEEK ]   KLRC4 [ MEM ]
Gene Expression Viewer (FireBrowse)KLRC4 [ Firebrowse - Broad ]
GenevisibleExpression of KLRC4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8302
GTEX Portal (Tissue expression)KLRC4
Human Protein AtlasENSG00000183542-KLRC4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43908   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43908  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43908
PhosPhoSitePlusO43908
Domains : Interpro (EBI)C-type_lectin-like/link_sf    CTDL_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KLRC4
SuperfamilyO43908
AlphaFold pdb e-kbO43908   
Human Protein Atlas [tissue]ENSG00000183542-KLRC4 [tissue]
HPRD16008
Protein Interaction databases
DIP (DOE-UCLA)O43908
IntAct (EBI)O43908
BioGRIDKLRC4
STRING (EMBL)KLRC4
ZODIACKLRC4
Ontologies - Pathways
QuickGOO43908
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
Pathways : BIOCARTARas-Independent pathway in NK cell-mediated cytotoxicity [Genes]   
Pathways : KEGGAntigen processing and presentation   
NDEx NetworkKLRC4
Atlas of Cancer Signalling NetworkKLRC4
Wikipedia pathwaysKLRC4
Orthology - Evolution
OrthoDB8302
GeneTree (enSembl)ENSG00000183542
Phylogenetic Trees/Animal Genes : TreeFamKLRC4
Homologs : HomoloGeneKLRC4
Homology/Alignments : Family Browser (UCSC)KLRC4
Gene fusions - Rearrangements
Fusion : QuiverKLRC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLRC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLRC4
dbVarKLRC4
ClinVarKLRC4
MonarchKLRC4
1000_GenomesKLRC4 
Exome Variant ServerKLRC4
GNOMAD BrowserENSG00000183542
Varsome BrowserKLRC4
ACMGKLRC4 variants
VarityO43908
Genomic Variants (DGV)KLRC4 [DGVbeta]
DECIPHERKLRC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLRC4 
Mutations
ICGC Data PortalKLRC4 
TCGA Data PortalKLRC4 
Broad Tumor PortalKLRC4
OASIS PortalKLRC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKLRC4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKLRC4
Mutations and Diseases : HGMDKLRC4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaKLRC4
DgiDB (Drug Gene Interaction Database)KLRC4
DoCM (Curated mutations)KLRC4
CIViC (Clinical Interpretations of Variants in Cancer)KLRC4
Cancer3DKLRC4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602893   
Orphanet703   
DisGeNETKLRC4
MedgenKLRC4
Genetic Testing Registry KLRC4
NextProtO43908 [Medical]
GENETestsKLRC4
Target ValidationKLRC4
Huge Navigator KLRC4 [HugePedia]
ClinGenKLRC4
Clinical trials, drugs, therapy
MyCancerGenomeKLRC4
Protein Interactions : CTDKLRC4
Pharm GKB GenePA30166
PharosO43908
Clinical trialKLRC4
Miscellaneous
canSAR (ICR)KLRC4
HarmonizomeKLRC4
DataMed IndexKLRC4
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKLRC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:15:16 CEST 2021

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