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KLRF1 (killer cell lectin like receptor F1)

Identity

Alias_nameskiller cell lectin-like receptor subfamily F, member 1
Alias_symbol (synonym)CLEC5C
NKp80
Other alias
HGNC (Hugo) KLRF1
LocusID (NCBI) 51348
Atlas_Id 64989
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 9827481 and ends at 9845004 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KLRF1   13342
Cards
Entrez_Gene (NCBI)KLRF1  51348  killer cell lectin like receptor F1
AliasesCLEC5C; NKp80
GeneCards (Weizmann)KLRF1
Ensembl hg19 (Hinxton)ENSG00000150045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150045 [Gene_View]  chr12:9827481-9845004 [Contig_View]  KLRF1 [Vega]
ICGC DataPortalENSG00000150045
TCGA cBioPortalKLRF1
AceView (NCBI)KLRF1
Genatlas (Paris)KLRF1
WikiGenes51348
SOURCE (Princeton)KLRF1
Genetics Home Reference (NIH)KLRF1
Genomic and cartography
GoldenPath hg38 (UCSC)KLRF1  -     chr12:9827481-9845004 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KLRF1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblKLRF1 - 12p13.31 [CytoView hg19]  KLRF1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIKLRF1 [Mapview hg19]  KLRF1 [Mapview hg38]
OMIM605029   
Gene and transcription
Genbank (Entrez)AF175206 AF175207 AF267244 AF267245 AJ305370
RefSeq transcript (Entrez)NM_001291822 NM_001291823 NM_016523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KLRF1
Cluster EST : UnigeneHs.183125 [ NCBI ]
CGAP (NCI)Hs.183125
Alternative Splicing GalleryENSG00000150045
Gene ExpressionKLRF1 [ NCBI-GEO ]   KLRF1 [ EBI - ARRAY_EXPRESS ]   KLRF1 [ SEEK ]   KLRF1 [ MEM ]
Gene Expression Viewer (FireBrowse)KLRF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51348
GTEX Portal (Tissue expression)KLRF1
Human Protein AtlasENSG00000150045-KLRF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZS2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZS2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZS2
Splice isoforms : SwissVarQ9NZS2
PhosPhoSitePlusQ9NZS2
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold    NKR-like_CTLD   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)KLRF1
DMDM Disease mutations51348
Blocks (Seattle)KLRF1
SuperfamilyQ9NZS2
Human Protein Atlas [tissue]ENSG00000150045-KLRF1 [tissue]
Peptide AtlasQ9NZS2
HPRD05432
IPIIPI00748823   IPI00953497   IPI00413307   IPI00044627   IPI00619913   IPI01015048   IPI01014609   IPI00983411   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZS2
IntAct (EBI)Q9NZS2
FunCoupENSG00000150045
BioGRIDKLRF1
STRING (EMBL)KLRF1
ZODIACKLRF1
Ontologies - Pathways
QuickGOQ9NZS2
Ontology : AmiGOtransmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  membrane  carbohydrate binding  MHC class I receptor activity  regulation of immune response  
Ontology : EGO-EBItransmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  membrane  carbohydrate binding  MHC class I receptor activity  regulation of immune response  
NDEx NetworkKLRF1
Atlas of Cancer Signalling NetworkKLRF1
Wikipedia pathwaysKLRF1
Orthology - Evolution
OrthoDB51348
GeneTree (enSembl)ENSG00000150045
Phylogenetic Trees/Animal Genes : TreeFamKLRF1
HOVERGENQ9NZS2
HOGENOMQ9NZS2
Homologs : HomoloGeneKLRF1
Homology/Alignments : Family Browser (UCSC)KLRF1
Gene fusions - Rearrangements
Fusion: Tumor Portal KLRF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKLRF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KLRF1
dbVarKLRF1
ClinVarKLRF1
1000_GenomesKLRF1 
Exome Variant ServerKLRF1
ExAC (Exome Aggregation Consortium)ENSG00000150045
GNOMAD BrowserENSG00000150045
Genetic variants : HAPMAP51348
Genomic Variants (DGV)KLRF1 [DGVbeta]
DECIPHERKLRF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKLRF1 
Mutations
ICGC Data PortalKLRF1 
TCGA Data PortalKLRF1 
Broad Tumor PortalKLRF1
OASIS PortalKLRF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKLRF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KLRF1
DgiDB (Drug Gene Interaction Database)KLRF1
DoCM (Curated mutations)KLRF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KLRF1 (select a term)
intoGenKLRF1
Cancer3DKLRF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605029   
Orphanet
MedgenKLRF1
Genetic Testing Registry KLRF1
NextProtQ9NZS2 [Medical]
TSGene51348
GENETestsKLRF1
Target ValidationKLRF1
Huge Navigator KLRF1 [HugePedia]
snp3D : Map Gene to Disease51348
BioCentury BCIQKLRF1
ClinGenKLRF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51348
Chemical/Pharm GKB GenePA30169
Clinical trialKLRF1
Miscellaneous
canSAR (ICR)KLRF1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKLRF1
EVEXKLRF1
GoPubMedKLRF1
iHOPKLRF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:45 CET 2017

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