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KMT5B (lysine (K)-specific methyltransferase 5B)

Identity

Alias_namesSUV420H1
suppressor of variegation 4-20 homolog 1 (Drosophila)
lysine (K)-specific methyltransferase 5B
Alias_symbol (synonym)CGI-85
Other aliasCGI85
HGNC (Hugo) KMT5B
LocusID (NCBI) 51111
Atlas_Id 77843
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67922330 and ends at 67980812 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KMT5B (11q13.2) / CATSPER1 (11q13.1)KMT5B (11q13.2) / COX4I1 (16q24.1)KMT5B (11q13.2) / KMT5B (11q13.2)
KMT5B (11q13.2) / MTL5 (11q13.3)KMT5B (11q13.2) / MYO1D (17q11.2)KMT5B (11q13.2) / PNP (14q11.2)
KMT5B (11q13.2) / SLITRK4 (Xq27.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)KMT5B   24283
Cards
Entrez_Gene (NCBI)KMT5B  51111  lysine (K)-specific methyltransferase 5B
AliasesCGI-85; CGI85; SUV420H1
GeneCards (Weizmann)KMT5B
Ensembl hg19 (Hinxton)ENSG00000110066 [Gene_View]  chr11:67922330-67980812 [Contig_View]  KMT5B [Vega]
Ensembl hg38 (Hinxton)ENSG00000110066 [Gene_View]  chr11:67922330-67980812 [Contig_View]  KMT5B [Vega]
ICGC DataPortalENSG00000110066
TCGA cBioPortalKMT5B
AceView (NCBI)KMT5B
Genatlas (Paris)KMT5B
WikiGenes51111
SOURCE (Princeton)KMT5B
Genetics Home Reference (NIH)KMT5B
Genomic and cartography
GoldenPath hg19 (UCSC)KMT5B  -     chr11:67922330-67980812 -  11q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KMT5B  -     11q13.2   [Description]    (hg38-Dec_2013)
EnsemblKMT5B - 11q13.2 [CytoView hg19]  KMT5B - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIKMT5B [Mapview hg19]  KMT5B [Mapview hg38]
OMIM610881   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001300907 NM_001300908 NM_001300909 NM_016028 NM_017635
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)KMT5B
Cluster EST : UnigeneHs.632120 [ NCBI ]
CGAP (NCI)Hs.632120
Alternative Splicing GalleryENSG00000110066
Gene ExpressionKMT5B [ NCBI-GEO ]   KMT5B [ EBI - ARRAY_EXPRESS ]   KMT5B [ SEEK ]   KMT5B [ MEM ]
Gene Expression Viewer (FireBrowse)KMT5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)51111
GTEX Portal (Tissue expression)KMT5B
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KMT5B
DMDM Disease mutations51111
Blocks (Seattle)KMT5B
Human Protein AtlasENSG00000110066
HPRD11616
IPIIPI00329708   IPI00455177   IPI00879841   IPI00878261   IPI00878622   IPI00844368   IPI00974435   IPI00878771   IPI00879308   IPI00385854   IPI01013656   
Protein Interaction databases
FunCoupENSG00000110066
BioGRIDKMT5B
STRING (EMBL)KMT5B
ZODIACKMT5B
Ontologies - Pathways
Huge Navigator KMT5B [HugePedia]
snp3D : Map Gene to Disease51111
BioCentury BCIQKMT5B
ClinGenKMT5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51111
Chemical/Pharm GKB GenePA134958369
Clinical trialKMT5B
Miscellaneous
canSAR (ICR)KMT5B (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKMT5B
EVEXKMT5B
GoPubMedKMT5B
iHOPKMT5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:06 CET 2017

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