Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KNCN (kinocilin)

Identity

Alias_symbol (synonym)FLJ32011
KINO
L5
Other aliasKino
HGNC (Hugo) KNCN
LocusID (NCBI) 148930
Atlas_Id 53016
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 46545644 and ends at 46551215 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KNCN (1p33) / PSMD1 (2q37.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KNCN   26488
Cards
Entrez_Gene (NCBI)KNCN  148930  kinocilin
AliasesKino; L5
GeneCards (Weizmann)KNCN
Ensembl hg19 (Hinxton)ENSG00000162456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162456 [Gene_View]  chr1:46545644-46551215 [Contig_View]  KNCN [Vega]
ICGC DataPortalENSG00000162456
TCGA cBioPortalKNCN
AceView (NCBI)KNCN
Genatlas (Paris)KNCN
WikiGenes148930
SOURCE (Princeton)KNCN
Genetics Home Reference (NIH)KNCN
Genomic and cartography
GoldenPath hg38 (UCSC)KNCN  -     chr1:46545644-46551215 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KNCN  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblKNCN - 1p33 [CytoView hg19]  KNCN - 1p33 [CytoView hg38]
Mapping of homologs : NCBIKNCN [Mapview hg19]  KNCN [Mapview hg38]
OMIM611455   
Gene and transcription
Genbank (Entrez)AK056573 BC101295 BC101296 BC101297 BC101298
RefSeq transcript (Entrez)NM_001097611 NM_001322255 NM_182516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KNCN
Cluster EST : UnigeneHs.350764 [ NCBI ]
CGAP (NCI)Hs.350764
Alternative Splicing GalleryENSG00000162456
Gene ExpressionKNCN [ NCBI-GEO ]   KNCN [ EBI - ARRAY_EXPRESS ]   KNCN [ SEEK ]   KNCN [ MEM ]
Gene Expression Viewer (FireBrowse)KNCN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148930
GTEX Portal (Tissue expression)KNCN
Human Protein AtlasENSG00000162456-KNCN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6PVL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6PVL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6PVL3
Splice isoforms : SwissVarA6PVL3
PhosPhoSitePlusA6PVL3
Domains : Interpro (EBI)Kinocilin   
Domain families : Pfam (Sanger)Kinocilin (PF15033)   
Domain families : Pfam (NCBI)pfam15033   
Conserved Domain (NCBI)KNCN
DMDM Disease mutations148930
Blocks (Seattle)KNCN
SuperfamilyA6PVL3
Human Protein Atlas [tissue]ENSG00000162456-KNCN [tissue]
Peptide AtlasA6PVL3
HPRD08117
IPIIPI00848184   IPI00939126   IPI00288930   
Protein Interaction databases
DIP (DOE-UCLA)A6PVL3
IntAct (EBI)A6PVL3
FunCoupENSG00000162456
BioGRIDKNCN
STRING (EMBL)KNCN
ZODIACKNCN
Ontologies - Pathways
QuickGOA6PVL3
Ontology : AmiGOintegral component of membrane  apical plasma membrane  cuticular plate  ciliary basal body  neuronal cell body  kinocilium  
Ontology : EGO-EBIintegral component of membrane  apical plasma membrane  cuticular plate  ciliary basal body  neuronal cell body  kinocilium  
NDEx NetworkKNCN
Atlas of Cancer Signalling NetworkKNCN
Wikipedia pathwaysKNCN
Orthology - Evolution
OrthoDB148930
GeneTree (enSembl)ENSG00000162456
Phylogenetic Trees/Animal Genes : TreeFamKNCN
HOVERGENA6PVL3
HOGENOMA6PVL3
Homologs : HomoloGeneKNCN
Homology/Alignments : Family Browser (UCSC)KNCN
Gene fusions - Rearrangements
Tumor Fusion PortalKNCN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKNCN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KNCN
dbVarKNCN
ClinVarKNCN
1000_GenomesKNCN 
Exome Variant ServerKNCN
ExAC (Exome Aggregation Consortium)ENSG00000162456
GNOMAD BrowserENSG00000162456
Genetic variants : HAPMAP148930
Genomic Variants (DGV)KNCN [DGVbeta]
DECIPHERKNCN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKNCN 
Mutations
ICGC Data PortalKNCN 
TCGA Data PortalKNCN 
Broad Tumor PortalKNCN
OASIS PortalKNCN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKNCN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKNCN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KNCN
DgiDB (Drug Gene Interaction Database)KNCN
DoCM (Curated mutations)KNCN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KNCN (select a term)
intoGenKNCN
Cancer3DKNCN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611455   
Orphanet
DisGeNETKNCN
MedgenKNCN
Genetic Testing Registry KNCN
NextProtA6PVL3 [Medical]
TSGene148930
GENETestsKNCN
Target ValidationKNCN
Huge Navigator KNCN [HugePedia]
snp3D : Map Gene to Disease148930
BioCentury BCIQKNCN
ClinGenKNCN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148930
Chemical/Pharm GKB GenePA162393639
Clinical trialKNCN
Miscellaneous
canSAR (ICR)KNCN (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKNCN
EVEXKNCN
GoPubMedKNCN
iHOPKNCN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:19:14 CET 2017

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