Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KNCN (kinocilin)

Identity

Alias (NCBI)Kino
L5
HGNC (Hugo) KNCN
HGNC Alias symbFLJ32011
KINO
L5
LocusID (NCBI) 148930
Atlas_Id 53016
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 46545641 and ends at 46551647 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KNCN (1p33) / PSMD1 (2q37.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)KNCN   26488
Cards
Entrez_Gene (NCBI)KNCN    kinocilin
AliasesKino; L5
GeneCards (Weizmann)KNCN
Ensembl hg19 (Hinxton)ENSG00000162456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162456 [Gene_View]  ENSG00000162456 [Sequence]  chr1:46545641-46551647 [Contig_View]  KNCN [Vega]
ICGC DataPortalENSG00000162456
TCGA cBioPortalKNCN
AceView (NCBI)KNCN
Genatlas (Paris)KNCN
SOURCE (Princeton)KNCN
Genetics Home Reference (NIH)KNCN
Genomic and cartography
GoldenPath hg38 (UCSC)KNCN  -     chr1:46545641-46551647 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KNCN  -     1p33   [Description]    (hg19-Feb_2009)
GoldenPathKNCN - 1p33 [CytoView hg19]  KNCN - 1p33 [CytoView hg38]
ImmunoBaseENSG00000162456
Genome Data Viewer NCBIKNCN [Mapview hg19]  
OMIM611455   
Gene and transcription
Genbank (Entrez)AK056573 BC101295 BC101296 BC101297 BC101298
RefSeq transcript (Entrez)NM_001097611 NM_001322255 NM_182516
Consensus coding sequences : CCDS (NCBI)KNCN
Gene ExpressionKNCN [ NCBI-GEO ]   KNCN [ EBI - ARRAY_EXPRESS ]   KNCN [ SEEK ]   KNCN [ MEM ]
Gene Expression Viewer (FireBrowse)KNCN [ Firebrowse - Broad ]
GenevisibleExpression of KNCN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148930
GTEX Portal (Tissue expression)KNCN
Human Protein AtlasENSG00000162456-KNCN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6PVL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6PVL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6PVL3
PhosPhoSitePlusA6PVL3
Domains : Interpro (EBI)Kinocilin   
Domain families : Pfam (Sanger)Kinocilin (PF15033)   
Domain families : Pfam (NCBI)pfam15033   
Conserved Domain (NCBI)KNCN
SuperfamilyA6PVL3
AlphaFold pdb e-kbA6PVL3   
Human Protein Atlas [tissue]ENSG00000162456-KNCN [tissue]
HPRD08117
Protein Interaction databases
DIP (DOE-UCLA)A6PVL3
IntAct (EBI)A6PVL3
BioGRIDKNCN
STRING (EMBL)KNCN
ZODIACKNCN
Ontologies - Pathways
QuickGOA6PVL3
Ontology : AmiGOintegral component of membrane  apical plasma membrane  cuticular plate  ciliary basal body  neuronal cell body  kinocilium  
Ontology : EGO-EBIintegral component of membrane  apical plasma membrane  cuticular plate  ciliary basal body  neuronal cell body  kinocilium  
NDEx NetworkKNCN
Atlas of Cancer Signalling NetworkKNCN
Wikipedia pathwaysKNCN
Orthology - Evolution
OrthoDB148930
GeneTree (enSembl)ENSG00000162456
Phylogenetic Trees/Animal Genes : TreeFamKNCN
Homologs : HomoloGeneKNCN
Homology/Alignments : Family Browser (UCSC)KNCN
Gene fusions - Rearrangements
Fusion : QuiverKNCN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKNCN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KNCN
dbVarKNCN
ClinVarKNCN
MonarchKNCN
1000_GenomesKNCN 
Exome Variant ServerKNCN
GNOMAD BrowserENSG00000162456
Varsome BrowserKNCN
ACMGKNCN variants
VarityA6PVL3
Genomic Variants (DGV)KNCN [DGVbeta]
DECIPHERKNCN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKNCN 
Mutations
ICGC Data PortalKNCN 
TCGA Data PortalKNCN 
Broad Tumor PortalKNCN
OASIS PortalKNCN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKNCN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKNCN
Mutations and Diseases : HGMDKNCN
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaKNCN
DgiDB (Drug Gene Interaction Database)KNCN
DoCM (Curated mutations)KNCN
CIViC (Clinical Interpretations of Variants in Cancer)KNCN
Cancer3DKNCN
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611455   
Orphanet
DisGeNETKNCN
MedgenKNCN
Genetic Testing Registry KNCN
NextProtA6PVL3 [Medical]
GENETestsKNCN
Target ValidationKNCN
Huge Navigator KNCN [HugePedia]
ClinGenKNCN
Clinical trials, drugs, therapy
MyCancerGenomeKNCN
Protein Interactions : CTDKNCN
Pharm GKB GenePA162393639
PharosA6PVL3
Clinical trialKNCN
Miscellaneous
canSAR (ICR)KNCN
HarmonizomeKNCN
DataMed IndexKNCN
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKNCN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:15:18 CEST 2021

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