Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KNOP1 (lysine rich nucleolar protein 1)

Identity

Alias_namesC16orf88
chromosome 16 open reading frame 88
Alias_symbol (synonym)101F10.1
FAM191A
TSG118
Other alias
HGNC (Hugo) KNOP1
LocusID (NCBI) 400506
Atlas_Id 64993
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19706352 and ends at 19718170 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KNOP1 (16p12.3) / C16orf62 (16p12.3)KNOP1 (16p12.3) / CYP24A1 (20q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KNOP1   34404
Cards
Entrez_Gene (NCBI)KNOP1  400506  lysine rich nucleolar protein 1
Aliases101F10.1; C16orf88; FAM191A; TSG118
GeneCards (Weizmann)KNOP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:19706352-19718170 [Contig_View]  KNOP1 [Vega]
TCGA cBioPortalKNOP1
AceView (NCBI)KNOP1
Genatlas (Paris)KNOP1
WikiGenes400506
SOURCE (Princeton)KNOP1
Genetics Home Reference (NIH)KNOP1
Genomic and cartography
GoldenPath hg38 (UCSC)KNOP1  -     chr16:19706352-19718170 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KNOP1  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblKNOP1 - 16p12.3 [CytoView hg19]  KNOP1 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIKNOP1 [Mapview hg19]  KNOP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC047010 BC089430 BC117562
RefSeq transcript (Entrez)NM_001012991 NM_001348527 NM_001348528 NM_001348529 NM_001348530 NM_001348531 NM_001348532 NM_001348533 NM_001348534 NM_001348535 NM_001348536 NM_001348537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KNOP1
Cluster EST : UnigeneHs.585209 [ NCBI ]
CGAP (NCI)Hs.585209
Gene ExpressionKNOP1 [ NCBI-GEO ]   KNOP1 [ EBI - ARRAY_EXPRESS ]   KNOP1 [ SEEK ]   KNOP1 [ MEM ]
Gene Expression Viewer (FireBrowse)KNOP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400506
GTEX Portal (Tissue expression)KNOP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1ED39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1ED39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1ED39
Splice isoforms : SwissVarQ1ED39
PhosPhoSitePlusQ1ED39
Domains : Interpro (EBI)SMAP_dom   
Domain families : Pfam (Sanger)SMAP (PF15477)   
Domain families : Pfam (NCBI)pfam15477   
Conserved Domain (NCBI)KNOP1
DMDM Disease mutations400506
Blocks (Seattle)KNOP1
SuperfamilyQ1ED39
Peptide AtlasQ1ED39
HPRD18415
IPIIPI00554560   
Protein Interaction databases
DIP (DOE-UCLA)Q1ED39
IntAct (EBI)Q1ED39
BioGRIDKNOP1
STRING (EMBL)KNOP1
ZODIACKNOP1
Ontologies - Pathways
QuickGOQ1ED39
Ontology : AmiGORNA binding  nucleolus  
Ontology : EGO-EBIRNA binding  nucleolus  
NDEx NetworkKNOP1
Atlas of Cancer Signalling NetworkKNOP1
Wikipedia pathwaysKNOP1
Orthology - Evolution
OrthoDB400506
Phylogenetic Trees/Animal Genes : TreeFamKNOP1
HOVERGENQ1ED39
HOGENOMQ1ED39
Homologs : HomoloGeneKNOP1
Homology/Alignments : Family Browser (UCSC)KNOP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKNOP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KNOP1
dbVarKNOP1
ClinVarKNOP1
1000_GenomesKNOP1 
Exome Variant ServerKNOP1
ExAC (Exome Aggregation Consortium)KNOP1 (select the gene name)
Genetic variants : HAPMAP400506
Genomic Variants (DGV)KNOP1 [DGVbeta]
DECIPHERKNOP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKNOP1 
Mutations
ICGC Data PortalKNOP1 
TCGA Data PortalKNOP1 
Broad Tumor PortalKNOP1
OASIS PortalKNOP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKNOP1
BioMutasearch KNOP1
DgiDB (Drug Gene Interaction Database)KNOP1
DoCM (Curated mutations)KNOP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KNOP1 (select a term)
intoGenKNOP1
Cancer3DKNOP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKNOP1
Genetic Testing Registry KNOP1
NextProtQ1ED39 [Medical]
TSGene400506
GENETestsKNOP1
Target ValidationKNOP1
Huge Navigator KNOP1 [HugePedia]
snp3D : Map Gene to Disease400506
BioCentury BCIQKNOP1
ClinGenKNOP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400506
Chemical/Pharm GKB GenePA162378471
Clinical trialKNOP1
Miscellaneous
canSAR (ICR)KNOP1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKNOP1
EVEXKNOP1
GoPubMedKNOP1
iHOPKNOP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:54:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.