Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KPNA5 (karyopherin alpha 5 (importin alpha 6))

Identity

Other namesIPOA6
SRP6
HGNC (Hugo) KPNA5
LocusID (NCBI) 3841
Location 6q22.1
Location_base_pair Starts at 117002367 and ends at 117063030 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KPNA5   6398
Cards
Entrez_Gene (NCBI)KPNA5  3841  karyopherin alpha 5 (importin alpha 6)
GeneCards (Weizmann)KPNA5
Ensembl (Hinxton)ENSG00000196911 [Gene_View]  chr6:117002367-117063030 [Contig_View]  KPNA5 [Vega]
AceView (NCBI)KPNA5
Genatlas (Paris)KPNA5
WikiGenes3841
SOURCE (Princeton)NM_002269
Genomic and cartography
GoldenPath (UCSC)KPNA5  -  6q22.1   chr6:117002367-117063030 +  6q22.1   [Description]    (hg19-Feb_2009)
EnsemblKPNA5 - 6q22.1 [CytoView]
Mapping of homologs : NCBIKPNA5 [Mapview]
OMIM604545   
Gene and transcription
Genbank (Entrez)AA332147 AF005361 AK314206 BC047409 BG721781
RefSeq transcript (Entrez)NM_002269
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004929328
Consensus coding sequences : CCDS (NCBI)KPNA5
Cluster EST : UnigeneHs.182971 [ NCBI ]
CGAP (NCI)Hs.182971
Alternative Splicing : Fast-db (Paris)GSHG0025990
Alternative Splicing GalleryENSG00000196911
Gene ExpressionKPNA5 [ NCBI-GEO ]     KPNA5 [ SEEK ]   KPNA5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15131 (Uniprot)
NextProtO15131  [Medical]
With graphics : InterProO15131
Splice isoforms : SwissVarO15131 (Swissvar)
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)    IBB (PS51214)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    Importin-a_IBB    Importing_su_alpha   
Related proteins : CluSTrO15131
Domain families : Pfam (Sanger)Arm (PF00514)    IBB (PF01749)   
Domain families : Pfam (NCBI)pfam00514    pfam01749   
Domain families : Smart (EMBL)ARM (SM00185)  
DMDM Disease mutations3841
Blocks (Seattle)O15131
Human Protein AtlasENSG00000196911
Peptide AtlasO15131
HPRD05179
IPIIPI00413214   IPI00642801   IPI00642306   
Protein Interaction databases
DIP (DOE-UCLA)O15131
IntAct (EBI)O15131
FunCoupENSG00000196911
BioGRIDKPNA5
InParanoidO15131
Interologous Interaction database O15131
IntegromeDBKPNA5
STRING (EMBL)KPNA5
Ontologies - Pathways
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  NLS-bearing protein import into nucleus  protein transporter activity  cytokine-mediated signaling pathway  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  NLS-bearing protein import into nucleus  protein transporter activity  cytokine-mediated signaling pathway  
REACTOMEKPNA5
Protein Interaction DatabaseKPNA5
Wikipedia pathwaysKPNA5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KPNA5
SNP (GeneSNP Utah)KPNA5
SNP : HGBaseKPNA5
Genetic variants : HAPMAPKPNA5
1000_GenomesKPNA5 
ICGC programENSG00000196911 
Somatic Mutations in Cancer : COSMICKPNA5 
CONAN: Copy Number AnalysisKPNA5 
Mutations and Diseases : HGMDKPNA5
OMIM604545   
GENETestsKPNA5
Disease Genetic AssociationKPNA5
Huge Navigator KPNA5 [HugePedia]  KPNA5 [HugeCancerGEM]
Genomic VariantsKPNA5  KPNA5 [DGVbeta]
Exome VariantKPNA5
dbVarKPNA5
ClinVarKPNA5
snp3D : Map Gene to Disease3841
General knowledge
Homologs : HomoloGeneKPNA5
Homology/Alignments : Family Browser (UCSC)KPNA5
Phylogenetic Trees/Animal Genes : TreeFamKPNA5
Chemical/Protein Interactions : CTD3841
Chemical/Pharm GKB GenePA30189
Clinical trialKPNA5
Cancer Resource (Charite)ENSG00000196911
Other databases
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
CoreMineKPNA5
iHOPKPNA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:52:33 CEST 2014

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