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KRBA1 (KRAB-A domain containing 1)

Identity

Alias_namesKRAB A domain containing 1
Alias_symbol (synonym)KIAA1862
Other alias-
HGNC (Hugo) KRBA1
LocusID (NCBI) 84626
Atlas_Id 64998
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 149715011 and ends at 149734575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRBA1   22228
Cards
Entrez_Gene (NCBI)KRBA1  84626  KRAB-A domain containing 1
Aliases
GeneCards (Weizmann)KRBA1
Ensembl hg19 (Hinxton)ENSG00000133619 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133619 [Gene_View]  chr7:149715011-149734575 [Contig_View]  KRBA1 [Vega]
ICGC DataPortalENSG00000133619
TCGA cBioPortalKRBA1
AceView (NCBI)KRBA1
Genatlas (Paris)KRBA1
WikiGenes84626
SOURCE (Princeton)KRBA1
Genetics Home Reference (NIH)KRBA1
Genomic and cartography
GoldenPath hg38 (UCSC)KRBA1  -     chr7:149715011-149734575 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRBA1  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblKRBA1 - 7q36.1 [CytoView hg19]  KRBA1 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIKRBA1 [Mapview hg19]  KRBA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058765 AL831935 BC033229 BC041587 BC142722
RefSeq transcript (Entrez)NM_001290187 NM_032534
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRBA1
Cluster EST : UnigeneHs.299560 [ NCBI ]
CGAP (NCI)Hs.299560
Alternative Splicing GalleryENSG00000133619
Gene ExpressionKRBA1 [ NCBI-GEO ]   KRBA1 [ EBI - ARRAY_EXPRESS ]   KRBA1 [ SEEK ]   KRBA1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRBA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84626
GTEX Portal (Tissue expression)KRBA1
Human Protein AtlasENSG00000133619-KRBA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5PL33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5PL33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5PL33
Splice isoforms : SwissVarA5PL33
PhosPhoSitePlusA5PL33
Domains : Interpro (EBI)KRBA1   
Domain families : Pfam (Sanger)KRBA1 (PF15287)   
Domain families : Pfam (NCBI)pfam15287   
Domain families : Smart (EMBL)KRBA1 (SM01258)  
Conserved Domain (NCBI)KRBA1
DMDM Disease mutations84626
Blocks (Seattle)KRBA1
SuperfamilyA5PL33
Human Protein Atlas [tissue]ENSG00000133619-KRBA1 [tissue]
Peptide AtlasA5PL33
HPRD11167
IPIIPI00162207   IPI00855982   IPI00183331   IPI00946467   IPI00977239   IPI00947500   IPI00879345   
Protein Interaction databases
DIP (DOE-UCLA)A5PL33
IntAct (EBI)A5PL33
FunCoupENSG00000133619
BioGRIDKRBA1
STRING (EMBL)KRBA1
ZODIACKRBA1
Ontologies - Pathways
QuickGOA5PL33
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkKRBA1
Atlas of Cancer Signalling NetworkKRBA1
Wikipedia pathwaysKRBA1
Orthology - Evolution
OrthoDB84626
GeneTree (enSembl)ENSG00000133619
Phylogenetic Trees/Animal Genes : TreeFamKRBA1
HOVERGENA5PL33
HOGENOMA5PL33
Homologs : HomoloGeneKRBA1
Homology/Alignments : Family Browser (UCSC)KRBA1
Gene fusions - Rearrangements
Fusion: Tumor Portal KRBA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRBA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRBA1
dbVarKRBA1
ClinVarKRBA1
1000_GenomesKRBA1 
Exome Variant ServerKRBA1
ExAC (Exome Aggregation Consortium)ENSG00000133619
GNOMAD BrowserENSG00000133619
Genetic variants : HAPMAP84626
Genomic Variants (DGV)KRBA1 [DGVbeta]
DECIPHERKRBA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRBA1 
Mutations
ICGC Data PortalKRBA1 
TCGA Data PortalKRBA1 
Broad Tumor PortalKRBA1
OASIS PortalKRBA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKRBA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRBA1
DgiDB (Drug Gene Interaction Database)KRBA1
DoCM (Curated mutations)KRBA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRBA1 (select a term)
intoGenKRBA1
Cancer3DKRBA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRBA1
Genetic Testing Registry KRBA1
NextProtA5PL33 [Medical]
TSGene84626
GENETestsKRBA1
Target ValidationKRBA1
Huge Navigator KRBA1 [HugePedia]
snp3D : Map Gene to Disease84626
BioCentury BCIQKRBA1
ClinGenKRBA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84626
Chemical/Pharm GKB GenePA162393641
Clinical trialKRBA1
Miscellaneous
canSAR (ICR)KRBA1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRBA1
EVEXKRBA1
GoPubMedKRBA1
iHOPKRBA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:47 CET 2017

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