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KRBA2 (KRAB-A domain containing 2)

Identity

Alias_namesKRAB A domain containing 2
Other alias-
HGNC (Hugo) KRBA2
LocusID (NCBI) 124751
Atlas_Id 64999
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8368653 and ends at 8376711 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRBA2   26989
Cards
Entrez_Gene (NCBI)KRBA2  124751  KRAB-A domain containing 2
Aliases
GeneCards (Weizmann)KRBA2
Ensembl hg19 (Hinxton)ENSG00000184619 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184619 [Gene_View]  chr17:8368653-8376711 [Contig_View]  KRBA2 [Vega]
ICGC DataPortalENSG00000184619
TCGA cBioPortalKRBA2
AceView (NCBI)KRBA2
Genatlas (Paris)KRBA2
WikiGenes124751
SOURCE (Princeton)KRBA2
Genetics Home Reference (NIH)KRBA2
Genomic and cartography
GoldenPath hg38 (UCSC)KRBA2  -     chr17:8368653-8376711 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRBA2  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblKRBA2 - 17p13.1 [CytoView hg19]  KRBA2 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIKRBA2 [Mapview hg19]  KRBA2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131219 BC024723 BC033390 BC146330 BC148756
RefSeq transcript (Entrez)NM_001304947 NM_213597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRBA2
Cluster EST : UnigeneHs.304604 [ NCBI ]
CGAP (NCI)Hs.304604
Alternative Splicing GalleryENSG00000184619
Gene ExpressionKRBA2 [ NCBI-GEO ]   KRBA2 [ EBI - ARRAY_EXPRESS ]   KRBA2 [ SEEK ]   KRBA2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRBA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124751
GTEX Portal (Tissue expression)KRBA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNG9
Splice isoforms : SwissVarQ6ZNG9
PhosPhoSitePlusQ6ZNG9
Domaine pattern : Prosite (Expaxy)INTEGRASE (PS50994)   
Domains : Interpro (EBI)Integrase_cat-core    KRAB    RNaseH-like_dom   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Conserved Domain (NCBI)KRBA2
DMDM Disease mutations124751
Blocks (Seattle)KRBA2
SuperfamilyQ6ZNG9
Human Protein AtlasENSG00000184619
Peptide AtlasQ6ZNG9
HPRD14028
IPIIPI00217917   IPI00798242   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNG9
IntAct (EBI)Q6ZNG9
FunCoupENSG00000184619
BioGRIDKRBA2
STRING (EMBL)KRBA2
ZODIACKRBA2
Ontologies - Pathways
QuickGOQ6ZNG9
Ontology : AmiGOnucleic acid binding  intracellular  regulation of transcription, DNA-templated  DNA integration  
Ontology : EGO-EBInucleic acid binding  intracellular  regulation of transcription, DNA-templated  DNA integration  
NDEx NetworkKRBA2
Atlas of Cancer Signalling NetworkKRBA2
Wikipedia pathwaysKRBA2
Orthology - Evolution
OrthoDB124751
GeneTree (enSembl)ENSG00000184619
Phylogenetic Trees/Animal Genes : TreeFamKRBA2
HOVERGENQ6ZNG9
HOGENOMQ6ZNG9
Homologs : HomoloGeneKRBA2
Homology/Alignments : Family Browser (UCSC)KRBA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRBA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRBA2
dbVarKRBA2
ClinVarKRBA2
1000_GenomesKRBA2 
Exome Variant ServerKRBA2
ExAC (Exome Aggregation Consortium)KRBA2 (select the gene name)
Genetic variants : HAPMAP124751
Genomic Variants (DGV)KRBA2 [DGVbeta]
DECIPHERKRBA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRBA2 
Mutations
ICGC Data PortalKRBA2 
TCGA Data PortalKRBA2 
Broad Tumor PortalKRBA2
OASIS PortalKRBA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRBA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRBA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRBA2
DgiDB (Drug Gene Interaction Database)KRBA2
DoCM (Curated mutations)KRBA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRBA2 (select a term)
intoGenKRBA2
Cancer3DKRBA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRBA2
Genetic Testing Registry KRBA2
NextProtQ6ZNG9 [Medical]
TSGene124751
GENETestsKRBA2
Target ValidationKRBA2
Huge Navigator KRBA2 [HugePedia]
snp3D : Map Gene to Disease124751
BioCentury BCIQKRBA2
ClinGenKRBA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124751
Chemical/Pharm GKB GenePA162393680
Clinical trialKRBA2
Miscellaneous
canSAR (ICR)KRBA2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRBA2
EVEXKRBA2
GoPubMedKRBA2
iHOPKRBA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:06 CEST 2017

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