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KRBOX1 (KRAB box domain containing 1)

Identity

Other alias-
HGNC (Hugo) KRBOX1
LocusID (NCBI) 100506243
Atlas_Id 65000
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42936342 and ends at 42942791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KRBOX1 (3p22.1) / POMGNT2 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRBOX1   38708
Cards
Entrez_Gene (NCBI)KRBOX1  100506243  KRAB box domain containing 1
Aliases
GeneCards (Weizmann)KRBOX1
Ensembl hg19 (Hinxton)ENSG00000240747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240747 [Gene_View]  chr3:42936342-42942791 [Contig_View]  KRBOX1 [Vega]
ICGC DataPortalENSG00000240747
TCGA cBioPortalKRBOX1
AceView (NCBI)KRBOX1
Genatlas (Paris)KRBOX1
WikiGenes100506243
SOURCE (Princeton)KRBOX1
Genetics Home Reference (NIH)KRBOX1
Genomic and cartography
GoldenPath hg38 (UCSC)KRBOX1  -     chr3:42936342-42942791 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRBOX1  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblKRBOX1 - 3p22.1 [CytoView hg19]  KRBOX1 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIKRBOX1 [Mapview hg19]  KRBOX1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK130974 BC041820 BC062786 BC103985 BC103986
RefSeq transcript (Entrez)NM_001205272 NM_015673
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRBOX1
Cluster EST : UnigeneHs.729533 [ NCBI ]
CGAP (NCI)Hs.729533
Alternative Splicing GalleryENSG00000240747
Gene ExpressionKRBOX1 [ NCBI-GEO ]   KRBOX1 [ EBI - ARRAY_EXPRESS ]   KRBOX1 [ SEEK ]   KRBOX1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRBOX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506243
GTEX Portal (Tissue expression)KRBOX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JBD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JBD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JBD0
Splice isoforms : SwissVarC9JBD0
PhosPhoSitePlusC9JBD0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)   
Domains : Interpro (EBI)KRAB   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)KRBOX1
DMDM Disease mutations100506243
Blocks (Seattle)KRBOX1
SuperfamilyC9JBD0
Human Protein AtlasENSG00000240747
Peptide AtlasC9JBD0
IPIIPI00256546   IPI00909480   
Protein Interaction databases
DIP (DOE-UCLA)C9JBD0
IntAct (EBI)C9JBD0
FunCoupENSG00000240747
BioGRIDKRBOX1
STRING (EMBL)KRBOX1
ZODIACKRBOX1
Ontologies - Pathways
QuickGOC9JBD0
Ontology : AmiGOnucleic acid binding  intracellular  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  intracellular  regulation of transcription, DNA-templated  
NDEx NetworkKRBOX1
Atlas of Cancer Signalling NetworkKRBOX1
Wikipedia pathwaysKRBOX1
Orthology - Evolution
OrthoDB100506243
GeneTree (enSembl)ENSG00000240747
Phylogenetic Trees/Animal Genes : TreeFamKRBOX1
HOVERGENC9JBD0
HOGENOMC9JBD0
Homologs : HomoloGeneKRBOX1
Homology/Alignments : Family Browser (UCSC)KRBOX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRBOX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRBOX1
dbVarKRBOX1
ClinVarKRBOX1
1000_GenomesKRBOX1 
Exome Variant ServerKRBOX1
ExAC (Exome Aggregation Consortium)KRBOX1 (select the gene name)
Genetic variants : HAPMAP100506243
Genomic Variants (DGV)KRBOX1 [DGVbeta]
DECIPHERKRBOX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRBOX1 
Mutations
ICGC Data PortalKRBOX1 
TCGA Data PortalKRBOX1 
Broad Tumor PortalKRBOX1
OASIS PortalKRBOX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRBOX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRBOX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRBOX1
DgiDB (Drug Gene Interaction Database)KRBOX1
DoCM (Curated mutations)KRBOX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRBOX1 (select a term)
intoGenKRBOX1
Cancer3DKRBOX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRBOX1
Genetic Testing Registry KRBOX1
NextProtC9JBD0 [Medical]
TSGene100506243
GENETestsKRBOX1
Target ValidationKRBOX1
Huge Navigator KRBOX1 [HugePedia]
snp3D : Map Gene to Disease100506243
BioCentury BCIQKRBOX1
ClinGenKRBOX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506243
Chemical/Pharm GKB GenePA165697464
Clinical trialKRBOX1
Miscellaneous
canSAR (ICR)KRBOX1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRBOX1
EVEXKRBOX1
GoPubMedKRBOX1
iHOPKRBOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:12:06 CEST 2017

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