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KRBOX4 (KRAB box domain containing 4)

Identity

Alias_namesZNF673
zinc finger protein 673
zinc finger family member 673
Alias_symbol (synonym)FLJ20344
Other alias
HGNC (Hugo) KRBOX4
LocusID (NCBI) 55634
Atlas_Id 65002
Location Xp11.3  [Link to chromosome band Xp11]
Location_base_pair Starts at 46447189 and ends at 46474639 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRBOX4   26007
Cards
Entrez_Gene (NCBI)KRBOX4  55634  KRAB box domain containing 4
AliasesZNF673
GeneCards (Weizmann)KRBOX4
Ensembl hg19 (Hinxton)ENSG00000147121 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147121 [Gene_View]  chrX:46447189-46474639 [Contig_View]  KRBOX4 [Vega]
ICGC DataPortalENSG00000147121
TCGA cBioPortalKRBOX4
AceView (NCBI)KRBOX4
Genatlas (Paris)KRBOX4
WikiGenes55634
SOURCE (Princeton)KRBOX4
Genetics Home Reference (NIH)KRBOX4
Genomic and cartography
GoldenPath hg38 (UCSC)KRBOX4  -     chrX:46447189-46474639 +  Xp11.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRBOX4  -     Xp11.3   [Description]    (hg19-Feb_2009)
EnsemblKRBOX4 - Xp11.3 [CytoView hg19]  KRBOX4 - Xp11.3 [CytoView hg38]
Mapping of homologs : NCBIKRBOX4 [Mapview hg19]  KRBOX4 [Mapview hg38]
OMIM300585   
Gene and transcription
Genbank (Entrez)AK000351 AK096413 AK097159 AK289703 BC012569
RefSeq transcript (Entrez)NM_001129898 NM_001129899 NM_001129900 NM_017776
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRBOX4
Cluster EST : UnigeneHs.632800 [ NCBI ]
CGAP (NCI)Hs.632800
Alternative Splicing GalleryENSG00000147121
Gene ExpressionKRBOX4 [ NCBI-GEO ]   KRBOX4 [ EBI - ARRAY_EXPRESS ]   KRBOX4 [ SEEK ]   KRBOX4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRBOX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55634
GTEX Portal (Tissue expression)KRBOX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JUW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JUW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JUW0
Splice isoforms : SwissVarQ5JUW0
PhosPhoSitePlusQ5JUW0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)   
Domains : Interpro (EBI)KRAB   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  
Conserved Domain (NCBI)KRBOX4
DMDM Disease mutations55634
Blocks (Seattle)KRBOX4
SuperfamilyQ5JUW0
Human Protein AtlasENSG00000147121
Peptide AtlasQ5JUW0
HPRD06530
IPIIPI00301968   IPI00743524   IPI00061355   IPI00936840   IPI00900376   IPI01013032   IPI00946760   
Protein Interaction databases
DIP (DOE-UCLA)Q5JUW0
IntAct (EBI)Q5JUW0
FunCoupENSG00000147121
BioGRIDKRBOX4
STRING (EMBL)KRBOX4
ZODIACKRBOX4
Ontologies - Pathways
QuickGOQ5JUW0
Ontology : AmiGOnucleic acid binding  intracellular  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleic acid binding  intracellular  regulation of transcription, DNA-templated  
NDEx NetworkKRBOX4
Atlas of Cancer Signalling NetworkKRBOX4
Wikipedia pathwaysKRBOX4
Orthology - Evolution
OrthoDB55634
GeneTree (enSembl)ENSG00000147121
Phylogenetic Trees/Animal Genes : TreeFamKRBOX4
HOVERGENQ5JUW0
HOGENOMQ5JUW0
Homologs : HomoloGeneKRBOX4
Homology/Alignments : Family Browser (UCSC)KRBOX4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRBOX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRBOX4
dbVarKRBOX4
ClinVarKRBOX4
1000_GenomesKRBOX4 
Exome Variant ServerKRBOX4
ExAC (Exome Aggregation Consortium)KRBOX4 (select the gene name)
Genetic variants : HAPMAP55634
Genomic Variants (DGV)KRBOX4 [DGVbeta]
DECIPHERKRBOX4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRBOX4 
Mutations
ICGC Data PortalKRBOX4 
TCGA Data PortalKRBOX4 
Broad Tumor PortalKRBOX4
OASIS PortalKRBOX4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKRBOX4
BioMutasearch KRBOX4
DgiDB (Drug Gene Interaction Database)KRBOX4
DoCM (Curated mutations)KRBOX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRBOX4 (select a term)
intoGenKRBOX4
Cancer3DKRBOX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300585   
Orphanet
MedgenKRBOX4
Genetic Testing Registry KRBOX4
NextProtQ5JUW0 [Medical]
TSGene55634
GENETestsKRBOX4
Target ValidationKRBOX4
Huge Navigator KRBOX4 [HugePedia]
snp3D : Map Gene to Disease55634
BioCentury BCIQKRBOX4
ClinGenKRBOX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55634
Chemical/Pharm GKB GenePA142670474
Clinical trialKRBOX4
Miscellaneous
canSAR (ICR)KRBOX4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRBOX4
EVEXKRBOX4
GoPubMedKRBOX4
iHOPKRBOX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:54:53 CEST 2017

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