Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRCC1 (lysine rich coiled-coil 1)

Identity

Alias_symbol (synonym)FLJ22333
Other aliasCHBP2
HGNC (Hugo) KRCC1
LocusID (NCBI) 51315
Atlas_Id 65003
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88027203 and ends at 88055801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IL31RA (5q11.2) / KRCC1 (2p11.2)KRCC1 (2p11.2) / KRCC1 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRCC1   28039
Cards
Entrez_Gene (NCBI)KRCC1  51315  lysine rich coiled-coil 1
AliasesCHBP2
GeneCards (Weizmann)KRCC1
Ensembl hg19 (Hinxton)ENSG00000172086 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172086 [Gene_View]  chr2:88027203-88055801 [Contig_View]  KRCC1 [Vega]
ICGC DataPortalENSG00000172086
TCGA cBioPortalKRCC1
AceView (NCBI)KRCC1
Genatlas (Paris)KRCC1
WikiGenes51315
SOURCE (Princeton)KRCC1
Genetics Home Reference (NIH)KRCC1
Genomic and cartography
GoldenPath hg38 (UCSC)KRCC1  -     chr2:88027203-88055801 -  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRCC1  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblKRCC1 - 2p11.2 [CytoView hg19]  KRCC1 - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIKRCC1 [Mapview hg19]  KRCC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF208845 AF217520 AJ227895 AK025986 BC015927
RefSeq transcript (Entrez)NM_001304526 NM_016618
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRCC1
Cluster EST : UnigeneHs.594961 [ NCBI ]
CGAP (NCI)Hs.594961
Alternative Splicing GalleryENSG00000172086
Gene ExpressionKRCC1 [ NCBI-GEO ]   KRCC1 [ EBI - ARRAY_EXPRESS ]   KRCC1 [ SEEK ]   KRCC1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRCC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51315
GTEX Portal (Tissue expression)KRCC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPI7
Splice isoforms : SwissVarQ9NPI7
PhosPhoSitePlusQ9NPI7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRCC1
DMDM Disease mutations51315
Blocks (Seattle)KRCC1
SuperfamilyQ9NPI7
Human Protein AtlasENSG00000172086
Peptide AtlasQ9NPI7
HPRD11269
IPIIPI00010208   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPI7
IntAct (EBI)Q9NPI7
FunCoupENSG00000172086
BioGRIDKRCC1
STRING (EMBL)KRCC1
ZODIACKRCC1
Ontologies - Pathways
QuickGOQ9NPI7
Ontology : AmiGOp53 binding  RNA binding  intracellular  intrinsic apoptotic signaling pathway by p53 class mediator  
Ontology : EGO-EBIp53 binding  RNA binding  intracellular  intrinsic apoptotic signaling pathway by p53 class mediator  
NDEx NetworkKRCC1
Atlas of Cancer Signalling NetworkKRCC1
Wikipedia pathwaysKRCC1
Orthology - Evolution
OrthoDB51315
GeneTree (enSembl)ENSG00000172086
Phylogenetic Trees/Animal Genes : TreeFamKRCC1
HOVERGENQ9NPI7
HOGENOMQ9NPI7
Homologs : HomoloGeneKRCC1
Homology/Alignments : Family Browser (UCSC)KRCC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRCC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRCC1
dbVarKRCC1
ClinVarKRCC1
1000_GenomesKRCC1 
Exome Variant ServerKRCC1
ExAC (Exome Aggregation Consortium)KRCC1 (select the gene name)
Genetic variants : HAPMAP51315
Genomic Variants (DGV)KRCC1 [DGVbeta]
DECIPHERKRCC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRCC1 
Mutations
ICGC Data PortalKRCC1 
TCGA Data PortalKRCC1 
Broad Tumor PortalKRCC1
OASIS PortalKRCC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRCC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRCC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRCC1
DgiDB (Drug Gene Interaction Database)KRCC1
DoCM (Curated mutations)KRCC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRCC1 (select a term)
intoGenKRCC1
Cancer3DKRCC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRCC1
Genetic Testing Registry KRCC1
NextProtQ9NPI7 [Medical]
TSGene51315
GENETestsKRCC1
Target ValidationKRCC1
Huge Navigator KRCC1 [HugePedia]
snp3D : Map Gene to Disease51315
BioCentury BCIQKRCC1
ClinGenKRCC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51315
Chemical/Pharm GKB GenePA162393681
Clinical trialKRCC1
Miscellaneous
canSAR (ICR)KRCC1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRCC1
EVEXKRCC1
GoPubMedKRCC1
iHOPKRCC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:54 CEST 2017

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