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KREMEN2 (kringle containing transmembrane protein 2)

Identity

Alias_symbol (synonym)MGC10791
KRM2
Other alias
HGNC (Hugo) KREMEN2
LocusID (NCBI) 79412
Atlas_Id 65005
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2964216 and ends at 2968383 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KREMEN2   18797
Cards
Entrez_Gene (NCBI)KREMEN2  79412  kringle containing transmembrane protein 2
AliasesKRM2
GeneCards (Weizmann)KREMEN2
Ensembl hg19 (Hinxton)ENSG00000131650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131650 [Gene_View]  chr16:2964216-2968383 [Contig_View]  KREMEN2 [Vega]
ICGC DataPortalENSG00000131650
TCGA cBioPortalKREMEN2
AceView (NCBI)KREMEN2
Genatlas (Paris)KREMEN2
WikiGenes79412
SOURCE (Princeton)KREMEN2
Genetics Home Reference (NIH)KREMEN2
Genomic and cartography
GoldenPath hg38 (UCSC)KREMEN2  -     chr16:2964216-2968383 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KREMEN2  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblKREMEN2 - 16p13.3 [CytoView hg19]  KREMEN2 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIKREMEN2 [Mapview hg19]  KREMEN2 [Mapview hg38]
OMIM609899   
Gene and transcription
Genbank (Entrez)AB086355 AB086356 AB086357 AB086405 AK027669
RefSeq transcript (Entrez)NM_001253725 NM_001253726 NM_024507 NM_145347 NM_145348 NM_172229
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KREMEN2
Cluster EST : UnigeneHs.661128 [ NCBI ]
CGAP (NCI)Hs.661128
Alternative Splicing GalleryENSG00000131650
Gene ExpressionKREMEN2 [ NCBI-GEO ]   KREMEN2 [ EBI - ARRAY_EXPRESS ]   KREMEN2 [ SEEK ]   KREMEN2 [ MEM ]
Gene Expression Viewer (FireBrowse)KREMEN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79412
GTEX Portal (Tissue expression)KREMEN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCW0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCW0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCW0
Splice isoforms : SwissVarQ8NCW0
PhosPhoSitePlusQ8NCW0
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    KRINGLE_1 (PS00021)    KRINGLE_2 (PS50070)    WSC (PS51212)   
Domains : Interpro (EBI)CUB_dom    Kremen    Kringle    Kringle-like    Kringle_CS    WSC_carb-bd   
Domain families : Pfam (Sanger)CUB (PF00431)    Kringle (PF00051)    WSC (PF01822)   
Domain families : Pfam (NCBI)pfam00431    pfam00051    pfam01822   
Domain families : Smart (EMBL)CUB (SM00042)  KR (SM00130)  WSC (SM00321)  
Conserved Domain (NCBI)KREMEN2
DMDM Disease mutations79412
Blocks (Seattle)KREMEN2
SuperfamilyQ8NCW0
Human Protein AtlasENSG00000131650
Peptide AtlasQ8NCW0
HPRD13933
IPIIPI00168475   IPI00168476   IPI00001574   IPI00101504   IPI00645005   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCW0
IntAct (EBI)Q8NCW0
FunCoupENSG00000131650
BioGRIDKREMEN2
STRING (EMBL)KREMEN2
ZODIACKREMEN2
Ontologies - Pathways
QuickGOQ8NCW0
Ontology : AmiGOplasma membrane  cell communication  membrane  integral component of membrane  Wnt signaling pathway  negative regulation of ossification  early endosome membrane  limb development  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIplasma membrane  cell communication  membrane  integral component of membrane  Wnt signaling pathway  negative regulation of ossification  early endosome membrane  limb development  negative regulation of canonical Wnt signaling pathway  
Pathways : BIOCARTAWnt/LRP6 Signalling [Genes]   
NDEx NetworkKREMEN2
Atlas of Cancer Signalling NetworkKREMEN2
Wikipedia pathwaysKREMEN2
Orthology - Evolution
OrthoDB79412
GeneTree (enSembl)ENSG00000131650
Phylogenetic Trees/Animal Genes : TreeFamKREMEN2
HOVERGENQ8NCW0
HOGENOMQ8NCW0
Homologs : HomoloGeneKREMEN2
Homology/Alignments : Family Browser (UCSC)KREMEN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKREMEN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KREMEN2
dbVarKREMEN2
ClinVarKREMEN2
1000_GenomesKREMEN2 
Exome Variant ServerKREMEN2
ExAC (Exome Aggregation Consortium)KREMEN2 (select the gene name)
Genetic variants : HAPMAP79412
Genomic Variants (DGV)KREMEN2 [DGVbeta]
DECIPHERKREMEN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKREMEN2 
Mutations
ICGC Data PortalKREMEN2 
TCGA Data PortalKREMEN2 
Broad Tumor PortalKREMEN2
OASIS PortalKREMEN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKREMEN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKREMEN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KREMEN2
DgiDB (Drug Gene Interaction Database)KREMEN2
DoCM (Curated mutations)KREMEN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KREMEN2 (select a term)
intoGenKREMEN2
Cancer3DKREMEN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609899   
Orphanet
MedgenKREMEN2
Genetic Testing Registry KREMEN2
NextProtQ8NCW0 [Medical]
TSGene79412
GENETestsKREMEN2
Target ValidationKREMEN2
Huge Navigator KREMEN2 [HugePedia]
snp3D : Map Gene to Disease79412
BioCentury BCIQKREMEN2
ClinGenKREMEN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79412
Chemical/Pharm GKB GenePA38683
Clinical trialKREMEN2
Miscellaneous
canSAR (ICR)KREMEN2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKREMEN2
EVEXKREMEN2
GoPubMedKREMEN2
iHOPKREMEN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:54 CEST 2017

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