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KRI1 (KRI1 homolog)

Identity

Alias_namesKRI1 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ12949
Other alias-
HGNC (Hugo) KRI1
LocusID (NCBI) 65095
Atlas_Id 65006
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10553085 and ends at 10566026 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KRI1 (19p13.2) / CCDC151 (19p13.2)KRI1 (19p13.2) / GPKOW (Xp11.23)KRI1 (19p13.2) / KRI1 (19p13.2)
KRI1 (19p13.2) / TMEM40 (3p25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRI1   25769
Cards
Entrez_Gene (NCBI)KRI1  65095  KRI1 homolog
Aliases
GeneCards (Weizmann)KRI1
Ensembl hg19 (Hinxton)ENSG00000129347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129347 [Gene_View]  chr19:10553085-10566026 [Contig_View]  KRI1 [Vega]
ICGC DataPortalENSG00000129347
TCGA cBioPortalKRI1
AceView (NCBI)KRI1
Genatlas (Paris)KRI1
WikiGenes65095
SOURCE (Princeton)KRI1
Genetics Home Reference (NIH)KRI1
Genomic and cartography
GoldenPath hg38 (UCSC)KRI1  -     chr19:10553085-10566026 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRI1  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblKRI1 - 19p13.2 [CytoView hg19]  KRI1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIKRI1 [Mapview hg19]  KRI1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023011 AK025907 AK093879 AK097181 AK300780
RefSeq transcript (Entrez)NM_023008 NM_178159
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRI1
Cluster EST : UnigeneHs.709967 [ NCBI ]
CGAP (NCI)Hs.709967
Alternative Splicing GalleryENSG00000129347
Gene ExpressionKRI1 [ NCBI-GEO ]   KRI1 [ EBI - ARRAY_EXPRESS ]   KRI1 [ SEEK ]   KRI1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65095
GTEX Portal (Tissue expression)KRI1
Human Protein AtlasENSG00000129347-KRI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9T8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9T8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9T8
Splice isoforms : SwissVarQ8N9T8
PhosPhoSitePlusQ8N9T8
Domains : Interpro (EBI)Kri1    Kri1-like_C   
Domain families : Pfam (Sanger)Kri1 (PF05178)    Kri1_C (PF12936)   
Domain families : Pfam (NCBI)pfam05178    pfam12936   
Conserved Domain (NCBI)KRI1
DMDM Disease mutations65095
Blocks (Seattle)KRI1
SuperfamilyQ8N9T8
Human Protein Atlas [tissue]ENSG00000129347-KRI1 [tissue]
Peptide AtlasQ8N9T8
HPRD10969
IPIIPI00798034   IPI00639842   IPI00186139   IPI00878114   IPI01009755   IPI01015406   IPI01015763   IPI01014465   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9T8
IntAct (EBI)Q8N9T8
FunCoupENSG00000129347
BioGRIDKRI1
STRING (EMBL)KRI1
ZODIACKRI1
Ontologies - Pathways
QuickGOQ8N9T8
Ontology : AmiGOendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleolus  nucleolus  90S preribosome  
Ontology : EGO-EBIendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  nucleolus  nucleolus  90S preribosome  
NDEx NetworkKRI1
Atlas of Cancer Signalling NetworkKRI1
Wikipedia pathwaysKRI1
Orthology - Evolution
OrthoDB65095
GeneTree (enSembl)ENSG00000129347
Phylogenetic Trees/Animal Genes : TreeFamKRI1
HOVERGENQ8N9T8
HOGENOMQ8N9T8
Homologs : HomoloGeneKRI1
Homology/Alignments : Family Browser (UCSC)KRI1
Gene fusions - Rearrangements
Fusion: Tumor Portal KRI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRI1
dbVarKRI1
ClinVarKRI1
1000_GenomesKRI1 
Exome Variant ServerKRI1
ExAC (Exome Aggregation Consortium)ENSG00000129347
GNOMAD BrowserENSG00000129347
Genetic variants : HAPMAP65095
Genomic Variants (DGV)KRI1 [DGVbeta]
DECIPHERKRI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRI1 
Mutations
ICGC Data PortalKRI1 
TCGA Data PortalKRI1 
Broad Tumor PortalKRI1
OASIS PortalKRI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRI1
DgiDB (Drug Gene Interaction Database)KRI1
DoCM (Curated mutations)KRI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRI1 (select a term)
intoGenKRI1
Cancer3DKRI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRI1
Genetic Testing Registry KRI1
NextProtQ8N9T8 [Medical]
TSGene65095
GENETestsKRI1
Target ValidationKRI1
Huge Navigator KRI1 [HugePedia]
snp3D : Map Gene to Disease65095
BioCentury BCIQKRI1
ClinGenKRI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65095
Chemical/Pharm GKB GenePA162393682
Clinical trialKRI1
Miscellaneous
canSAR (ICR)KRI1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRI1
EVEXKRI1
GoPubMedKRI1
iHOPKRI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:48 CET 2017

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