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KRR1 (KRR1, small subunit (SSU) processome component, homolog (yeast))

Identity

Alias_namesHRB2
HIV-1 rev binding protein 2
KRR1, small subunit (SSU) processome component, homolog (yeast)
Alias_symbol (synonym)RIP-1
Other alias
HGNC (Hugo) KRR1
LocusID (NCBI) 11103
Atlas_Id 65007
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 75891419 and ends at 75905418 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRR1   5176
Cards
Entrez_Gene (NCBI)KRR1  11103  KRR1, small subunit (SSU) processome component, homolog (yeast)
AliasesHRB2; RIP-1
GeneCards (Weizmann)KRR1
Ensembl hg19 (Hinxton) [Gene_View]  chr12:75891419-75905418 [Contig_View]  KRR1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:75891419-75905418 [Contig_View]  KRR1 [Vega]
TCGA cBioPortalKRR1
AceView (NCBI)KRR1
Genatlas (Paris)KRR1
WikiGenes11103
SOURCE (Princeton)KRR1
Genetics Home Reference (NIH)KRR1
Genomic and cartography
GoldenPath hg19 (UCSC)KRR1  -     chr12:75891419-75905418 -  12q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRR1  -     12q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRR1 - 12q21.2 [CytoView hg19]  KRR1 - 12q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRR1 [Mapview hg19]  KRR1 [Mapview hg38]
OMIM612817   
Gene and transcription
Genbank (Entrez)AK022133 AK297602 AK313687 BC005225 BC014034
RefSeq transcript (Entrez)NM_007043
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)KRR1
Cluster EST : UnigeneHs.645517 [ NCBI ]
CGAP (NCI)Hs.645517
Gene ExpressionKRR1 [ NCBI-GEO ]   KRR1 [ EBI - ARRAY_EXPRESS ]   KRR1 [ SEEK ]   KRR1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11103
GTEX Portal (Tissue expression)KRR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13601   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13601  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13601
Splice isoforms : SwissVarQ13601
PhosPhoSitePlusQ13601
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    rRNA_assembly_KRR1   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)KRR1
DMDM Disease mutations11103
Blocks (Seattle)KRR1
SuperfamilyQ13601
Peptide AtlasQ13601
HPRD11027
IPIIPI00156032   IPI00942884   
Protein Interaction databases
DIP (DOE-UCLA)Q13601
IntAct (EBI)Q13601
BioGRIDKRR1
STRING (EMBL)KRR1
ZODIACKRR1
Ontologies - Pathways
QuickGOQ13601
Ontology : AmiGOprotein binding  nucleus  nucleolus  cytoplasm  rRNA processing  membrane  small-subunit processome  poly(A) RNA binding  intercellular bridge  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cytoplasm  rRNA processing  membrane  small-subunit processome  poly(A) RNA binding  intercellular bridge  
NDEx NetworkKRR1
Atlas of Cancer Signalling NetworkKRR1
Wikipedia pathwaysKRR1
Orthology - Evolution
OrthoDB11103
Phylogenetic Trees/Animal Genes : TreeFamKRR1
HOVERGENQ13601
HOGENOMQ13601
Homologs : HomoloGeneKRR1
Homology/Alignments : Family Browser (UCSC)KRR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRR1
dbVarKRR1
ClinVarKRR1
1000_GenomesKRR1 
Exome Variant ServerKRR1
ExAC (Exome Aggregation Consortium)KRR1 (select the gene name)
Genetic variants : HAPMAP11103
Genomic Variants (DGV)KRR1 [DGVbeta]
DECIPHER (Syndromes)12:75891419-75905418  
CONAN: Copy Number AnalysisKRR1 
Mutations
ICGC Data PortalKRR1 
TCGA Data PortalKRR1 
Broad Tumor PortalKRR1
OASIS PortalKRR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRR1
DgiDB (Drug Gene Interaction Database)KRR1
DoCM (Curated mutations)KRR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRR1 (select a term)
intoGenKRR1
Cancer3DKRR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612817   
Orphanet
MedgenKRR1
Genetic Testing Registry KRR1
NextProtQ13601 [Medical]
TSGene11103
GENETestsKRR1
Huge Navigator KRR1 [HugePedia]
snp3D : Map Gene to Disease11103
BioCentury BCIQKRR1
ClinGenKRR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11103
Chemical/Pharm GKB GenePA29450
Clinical trialKRR1
Miscellaneous
canSAR (ICR)KRR1 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRR1
EVEXKRR1
GoPubMedKRR1
iHOPKRR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:10:09 CET 2017

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