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KRR1 (KRR1 small subunit processome component homolog)

Identity

Alias (NCBI)HRB2
RIP-1
HGNC (Hugo) KRR1
HGNC Alias symbRIP-1
HGNC Previous nameHRB2
HGNC Previous nameHIV-1 rev binding protein 2
 KRR1, small subunit (SSU) processome component, homolog (yeast)
 KRR1, small subunit processome component homolog
LocusID (NCBI) 11103
Atlas_Id 56752
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 75490863 and ends at 75511609 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;21)(q21;q22) RUNX1/KRR1


External links

 

Nomenclature
HGNC (Hugo)KRR1   5176
Cards
Entrez_Gene (NCBI)KRR1    KRR1 small subunit processome component homolog
AliasesHRB2; RIP-1
GeneCards (Weizmann)KRR1
Ensembl hg19 (Hinxton)ENSG00000111615 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111615 [Gene_View]  ENSG00000111615 [Sequence]  chr12:75490863-75511609 [Contig_View]  KRR1 [Vega]
ICGC DataPortalENSG00000111615
TCGA cBioPortalKRR1
AceView (NCBI)KRR1
Genatlas (Paris)KRR1
SOURCE (Princeton)KRR1
Genetics Home Reference (NIH)KRR1
Genomic and cartography
GoldenPath hg38 (UCSC)KRR1  -     chr12:75490863-75511609 -  12q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRR1  -     12q21.2   [Description]    (hg19-Feb_2009)
GoldenPathKRR1 - 12q21.2 [CytoView hg19]  KRR1 - 12q21.2 [CytoView hg38]
ImmunoBaseENSG00000111615
Genome Data Viewer NCBIKRR1 [Mapview hg19]  
OMIM612817   
Gene and transcription
Genbank (Entrez)AK022133 AK297602 AK313687 BC005225 BC014034
RefSeq transcript (Entrez)NM_007043
Consensus coding sequences : CCDS (NCBI)KRR1
Gene ExpressionKRR1 [ NCBI-GEO ]   KRR1 [ EBI - ARRAY_EXPRESS ]   KRR1 [ SEEK ]   KRR1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRR1 [ Firebrowse - Broad ]
GenevisibleExpression of KRR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11103
GTEX Portal (Tissue expression)KRR1
Human Protein AtlasENSG00000111615-KRR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13601   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13601  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13601
PhosPhoSitePlusQ13601
Domains : Interpro (EBI)KH_8    KH_dom    KH_dom_type_1_sf    rRNA_assembly_KRR1   
Domain families : Pfam (Sanger)KH_8 (PF17903)   
Domain families : Pfam (NCBI)pfam17903   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)KRR1
SuperfamilyQ13601
AlphaFold pdb e-kbQ13601   
Human Protein Atlas [tissue]ENSG00000111615-KRR1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q13601
IntAct (EBI)Q13601
BioGRIDKRR1
STRING (EMBL)KRR1
ZODIACKRR1
Ontologies - Pathways
QuickGOQ13601
Ontology : AmiGORNA binding  protein binding  nucleoplasm  nucleoplasm  chromosome  nucleolus  nucleolus  cytoplasm  rRNA processing  membrane  small-subunit processome  intercellular bridge  
Ontology : EGO-EBIRNA binding  protein binding  nucleoplasm  nucleoplasm  chromosome  nucleolus  nucleolus  cytoplasm  rRNA processing  membrane  small-subunit processome  intercellular bridge  
NDEx NetworkKRR1
Atlas of Cancer Signalling NetworkKRR1
Wikipedia pathwaysKRR1
Orthology - Evolution
OrthoDB11103
GeneTree (enSembl)ENSG00000111615
Phylogenetic Trees/Animal Genes : TreeFamKRR1
Homologs : HomoloGeneKRR1
Homology/Alignments : Family Browser (UCSC)KRR1
Gene fusions - Rearrangements
Fusion : QuiverKRR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRR1
dbVarKRR1
ClinVarKRR1
MonarchKRR1
1000_GenomesKRR1 
Exome Variant ServerKRR1
GNOMAD BrowserENSG00000111615
Varsome BrowserKRR1
ACMGKRR1 variants
VarityQ13601
Genomic Variants (DGV)KRR1 [DGVbeta]
DECIPHERKRR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRR1 
Mutations
ICGC Data PortalKRR1 
TCGA Data PortalKRR1 
Broad Tumor PortalKRR1
OASIS PortalKRR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKRR1
Mutations and Diseases : HGMDKRR1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaKRR1
DgiDB (Drug Gene Interaction Database)KRR1
DoCM (Curated mutations)KRR1
CIViC (Clinical Interpretations of Variants in Cancer)KRR1
Cancer3DKRR1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612817   
Orphanet
DisGeNETKRR1
MedgenKRR1
Genetic Testing Registry KRR1
NextProtQ13601 [Medical]
GENETestsKRR1
Target ValidationKRR1
Huge Navigator KRR1 [HugePedia]
ClinGenKRR1
Clinical trials, drugs, therapy
MyCancerGenomeKRR1
Protein Interactions : CTDKRR1
Pharm GKB GenePA29450
PharosQ13601
Clinical trialKRR1
Miscellaneous
canSAR (ICR)KRR1
HarmonizomeKRR1
DataMed IndexKRR1
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXKRR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:15:21 CEST 2021

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