Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT10 (keratin 10)

Identity

Other namesBCIE
BIE
CK10
EHK
K10
KPP
HGNC (Hugo) KRT10
LocusID (NCBI) 3858
Location 17q21.2
Location_base_pair Starts at 38974369 and ends at 38978863 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT10   6413
Cards
Entrez_Gene (NCBI)KRT10  3858  keratin 10
GeneCards (Weizmann)KRT10
Ensembl (Hinxton)ENSG00000186395 [Gene_View]  chr17:38974369-38978863 [Contig_View]  KRT10 [Vega]
ICGC DataPortalENSG00000186395
cBioPortalKRT10
AceView (NCBI)KRT10
Genatlas (Paris)KRT10
WikiGenes3858
SOURCE (Princeton)NM_000421
Genomic and cartography
GoldenPath (UCSC)KRT10  -  17q21.2   chr17:38974369-38978863 -  17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT10 - 17q21.2 [CytoView]
Mapping of homologs : NCBIKRT10 [Mapview]
OMIM113800   148080   607602   609165   
Gene and transcription
Genbank (Entrez)BC034697 CU455823 DQ893356 DQ896675 J04029
RefSeq transcript (Entrez)NM_000421
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008405 NG_033147 NT_010783 NW_001838435 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT10
Cluster EST : UnigeneHs.99936 [ NCBI ]
CGAP (NCI)Hs.99936
Alternative Splicing : Fast-db (Paris)GSHG0013363
Alternative Splicing GalleryENSG00000186395
Gene ExpressionKRT10 [ NCBI-GEO ]     KRT10 [ SEEK ]   KRT10 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13645 (Uniprot)
NextProtP13645  [Medical]
With graphics : InterProP13645
Splice isoforms : SwissVarP13645 (Swissvar)
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF [organisation]   Intermediate_filament_CS [organisation]   Keratin_I [organisation]   Prefoldin [organisation]  
Related proteins : CluSTrP13645
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3858
Blocks (Seattle)P13645
PDB (SRS)3ASW    4F1Z   
PDB (PDBSum)3ASW    4F1Z   
PDB (IMB)3ASW    4F1Z   
PDB (RSDB)3ASW    4F1Z   
Human Protein AtlasENSG00000186395 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP13645
HPRD01021
IPIIPI00009865   
Protein Interaction databases
DIP (DOE-UCLA)P13645
IntAct (EBI)P13645
FunCoupENSG00000186395
BioGRIDKRT10
InParanoidP13645
Interologous Interaction database P13645
IntegromeDBKRT10
STRING (EMBL)KRT10
Ontologies - Pathways
Ontology : AmiGOextracellular space  nucleus  cytoplasm  intermediate filament  membrane  keratinocyte differentiation  structural constituent of epidermis  keratin filament  extracellular vesicular exosome  cellular response to calcium ion  
Ontology : EGO-EBIextracellular space  nucleus  cytoplasm  intermediate filament  membrane  keratinocyte differentiation  structural constituent of epidermis  keratin filament  extracellular vesicular exosome  cellular response to calcium ion  
Pathways : KEGGStaphylococcus aureus infection   
Protein Interaction DatabaseKRT10
Wikipedia pathwaysKRT10
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KRT10
snp3D : Map Gene to Disease3858
SNP (GeneSNP Utah)KRT10
SNP : HGBaseKRT10
Genetic variants : HAPMAPKRT10
Exome VariantKRT10
1000_GenomesKRT10 
ICGC programENSG00000186395 
Somatic Mutations in Cancer : COSMICKRT10 
CONAN: Copy Number AnalysisKRT10 
Mutations and Diseases : HGMDKRT10
Mutations and Diseases : intOGenKRT10
Genomic VariantsKRT10  KRT10 [DGVbeta]
dbVarKRT10
ClinVarKRT10
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM113800    148080    607602    609165   
MedgenKRT10
GENETestsKRT10
Disease Genetic AssociationKRT10
Huge Navigator KRT10 [HugePedia]  KRT10 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneKRT10
Homology/Alignments : Family Browser (UCSC)KRT10
Phylogenetic Trees/Animal Genes : TreeFamKRT10
Chemical/Protein Interactions : CTD3858
Chemical/Pharm GKB GenePA30200
Clinical trialKRT10
Cancer Resource (Charite)ENSG00000186395
Other databases
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
CoreMineKRT10
iHOPKRT10
OncoSearchKRT10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:58:40 CEST 2014

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