Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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KRT13 (keratin 13)

Identity

Other namesCK13
K13
WSN2
HGNC (Hugo) KRT13
LocusID (NCBI) 3860
Location 17q21.2
Location_base_pair Starts at 39657233 and ends at 39661865 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT13   6415
Cards
Entrez_Gene (NCBI)KRT13  3860  keratin 13
GeneCards (Weizmann)KRT13
Ensembl hg19 (Hinxton)ENSG00000171401 [Gene_View]  chr17:39657233-39661865 [Contig_View]  KRT13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171401 [Gene_View]  chr17:39657233-39661865 [Contig_View]  KRT13 [Vega]
ICGC DataPortalENSG00000171401
cBioPortalKRT13
AceView (NCBI)KRT13
Genatlas (Paris)KRT13
WikiGenes3860
SOURCE (Princeton)KRT13
Genomic and cartography
GoldenPath hg19 (UCSC)KRT13  -     chr17:39657233-39661865 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT13  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT13 - 17q21.2 [CytoView hg19]  KRT13 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT13 [Mapview hg19]  KRT13 [Mapview hg38]
OMIM148065   615785   
Gene and transcription
Genbank (Entrez)AK092276 AK223051 AK223077 AK290244 AK296806
RefSeq transcript (Entrez)NM_002274 NM_153490
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008406 NT_010783 NW_001838435 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT13
Cluster EST : UnigeneHs.654550 [ NCBI ]
CGAP (NCI)Hs.654550
Alternative Splicing : Fast-db (Paris)GSHG0013392
Alternative Splicing GalleryENSG00000171401
Gene ExpressionKRT13 [ NCBI-GEO ]     KRT13 [ SEEK ]   KRT13 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13646 (Uniprot)
NextProtP13646  [Medical]
With graphics : InterProP13646
Splice isoforms : SwissVarP13646 (Swissvar)
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Related proteins : CluSTrP13646
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3860
Blocks (Seattle)P13646
Human Protein AtlasENSG00000171401
Peptide AtlasP13646
HPRD01016
IPIIPI00009866   IPI00550661   IPI00171196   IPI00930614   IPI00952922   
Protein Interaction databases
DIP (DOE-UCLA)P13646
IntAct (EBI)P13646
FunCoupENSG00000171401
BioGRIDKRT13
IntegromeDBKRT13
STRING (EMBL)KRT13
Ontologies - Pathways
QuickGOP13646
Ontology : AmiGOstructural molecule activity  nucleus  cytoskeleton organization  response to radiation  tongue morphogenesis  keratin filament  intermediate filament cytoskeleton  extracellular vesicular exosome  cellular response to retinoic acid  
Ontology : EGO-EBIstructural molecule activity  nucleus  cytoskeleton organization  response to radiation  tongue morphogenesis  keratin filament  intermediate filament cytoskeleton  extracellular vesicular exosome  cellular response to retinoic acid  
Protein Interaction DatabaseKRT13
DoCM (Curated mutations)KRT13
Wikipedia pathwaysKRT13
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKRT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT13
dbVarKRT13
ClinVarKRT13
1000_GenomesKRT13 
Exome Variant ServerKRT13
SNP (GeneSNP Utah)KRT13
SNP : HGBaseKRT13
Genetic variants : HAPMAPKRT13
Genomic Variants (DGV)KRT13 [DGVbeta]
Mutations
ICGC Data PortalENSG00000171401 
Somatic Mutations in Cancer : COSMICKRT13 
CONAN: Copy Number AnalysisKRT13 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:39657233-39661865
Mutations and Diseases : HGMDKRT13
OMIM148065    615785   
MedgenKRT13
NextProtP13646 [Medical]
GENETestsKRT13
Disease Genetic AssociationKRT13
Huge Navigator KRT13 [HugePedia]  KRT13 [HugeCancerGEM]
snp3D : Map Gene to Disease3860
DGIdb (Drug Gene Interaction db)KRT13
General knowledge
Homologs : HomoloGeneKRT13
Homology/Alignments : Family Browser (UCSC)KRT13
Phylogenetic Trees/Animal Genes : TreeFamKRT13
Chemical/Protein Interactions : CTD3860
Chemical/Pharm GKB GenePA30202
Clinical trialKRT13
Cancer Resource (Charite)ENSG00000171401
Other databases
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
CoreMineKRT13
GoPubMedKRT13
iHOPKRT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 16:29:47 CET 2015
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