Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

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KRT13 (keratin 13, type I)


Other namesCK13
HGNC (Hugo) KRT13
LocusID (NCBI) 3860
Location 17q21.2
Location_base_pair Starts at 39657233 and ends at 39661865 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)KRT13   6415
Entrez_Gene (NCBI)KRT13  3860  keratin 13, type I
GeneCards (Weizmann)KRT13
Ensembl hg19 (Hinxton)ENSG00000171401 [Gene_View]  chr17:39657233-39661865 [Contig_View]  KRT13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171401 [Gene_View]  chr17:39657233-39661865 [Contig_View]  KRT13 [Vega]
ICGC DataPortalENSG00000171401
AceView (NCBI)KRT13
Genatlas (Paris)KRT13
SOURCE (Princeton)KRT13
Genomic and cartography
GoldenPath hg19 (UCSC)KRT13  -     chr17:39657233-39661865 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT13  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT13 - 17q21.2 [CytoView hg19]  KRT13 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT13 [Mapview hg19]  KRT13 [Mapview hg38]
OMIM148065   615785   
Gene and transcription
Genbank (Entrez)AK092276 AK223051 AK223077 AK290244 AK296806
RefSeq transcript (Entrez)NM_002274 NM_153490
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_008406 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT13
Cluster EST : UnigeneHs.654550 [ NCBI ]
CGAP (NCI)Hs.654550
Alternative Splicing : Fast-db (Paris)GSHG0013392
Alternative Splicing GalleryENSG00000171401
Gene ExpressionKRT13 [ NCBI-GEO ]     KRT13 [ SEEK ]   KRT13 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13646 (Uniprot)
NextProtP13646  [Medical]
With graphics : InterProP13646
Splice isoforms : SwissVarP13646 (Swissvar)
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Related proteins : CluSTrP13646
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3860
Blocks (Seattle)P13646
Human Protein AtlasENSG00000171401
Peptide AtlasP13646
IPIIPI00009866   IPI00550661   IPI00171196   IPI00930614   IPI00952922   
Protein Interaction databases
IntAct (EBI)P13646
Ontologies - Pathways
Ontology : AmiGOstructural molecule activity  nucleus  cytoskeleton organization  response to radiation  tongue morphogenesis  keratin filament  intermediate filament cytoskeleton  extracellular exosome  cellular response to retinoic acid  
Ontology : EGO-EBIstructural molecule activity  nucleus  cytoskeleton organization  response to radiation  tongue morphogenesis  keratin filament  intermediate filament cytoskeleton  extracellular exosome  cellular response to retinoic acid  
Protein Interaction DatabaseKRT13
DoCM (Curated mutations)KRT13
Wikipedia pathwaysKRT13
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKRT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT13
Exome Variant ServerKRT13
SNP (GeneSNP Utah)KRT13
Genetic variants : HAPMAPKRT13
Genomic Variants (DGV)KRT13 [DGVbeta]
ICGC Data PortalENSG00000171401 
Somatic Mutations in Cancer : COSMICKRT13 
CONAN: Copy Number AnalysisKRT13 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)17:39657233-39661865
Mutations and Diseases : HGMDKRT13
OMIM148065    615785   
NextProtP13646 [Medical]
Disease Genetic AssociationKRT13
Huge Navigator KRT13 [HugePedia]  KRT13 [HugeCancerGEM]
snp3D : Map Gene to Disease3860
DGIdb (Drug Gene Interaction db)KRT13
General knowledge
Homologs : HomoloGeneKRT13
Homology/Alignments : Family Browser (UCSC)KRT13
Phylogenetic Trees/Animal Genes : TreeFamKRT13
Chemical/Protein Interactions : CTD3860
Chemical/Pharm GKB GenePA30202
Clinical trialKRT13
Cancer Resource (Charite)ENSG00000171401
Other databases
PubMed42 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:47:48 CET 2015

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