Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KRT13 (keratin 13)

Identity

Alias_nameskeratin 13
Alias_symbol (synonym)K13
CK13
MGC3781
MGC161462
Other aliasWSN2
HGNC (Hugo) KRT13
LocusID (NCBI) 3860
Atlas_Id 49870
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41500981 and ends at 41505613 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GAPDH (12p13.31) / KRT13 (17q21.2)KRT13 (17q21.2) / FAM63B (15q21.3)KRT13 (17q21.2) / GDI2 (10p15.1)
KRT13 (17q21.2) / KRT13 (17q21.2)KRT13 (17q21.2) / MUC21 (6p21.33)RPL19 (17q12) / KRT13 (17q21.2)
RPL27 (17q21.31) / KRT13 (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;17)(p13;q21) GAPDH/KRT13

External links

Nomenclature
HGNC (Hugo)KRT13   6415
Cards
Entrez_Gene (NCBI)KRT13  3860  keratin 13
AliasesCK13; K13; WSN2
GeneCards (Weizmann)KRT13
Ensembl hg19 (Hinxton)ENSG00000171401 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171401 [Gene_View]  chr17:41500981-41505613 [Contig_View]  KRT13 [Vega]
ICGC DataPortalENSG00000171401
TCGA cBioPortalKRT13
AceView (NCBI)KRT13
Genatlas (Paris)KRT13
WikiGenes3860
SOURCE (Princeton)KRT13
Genetics Home Reference (NIH)KRT13
Genomic and cartography
GoldenPath hg38 (UCSC)KRT13  -     chr17:41500981-41505613 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT13  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT13 - 17q21.2 [CytoView hg19]  KRT13 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT13 [Mapview hg19]  KRT13 [Mapview hg38]
OMIM148065   615785   
Gene and transcription
Genbank (Entrez)AK092276 AK223051 AK223077 AK290244 AK296806
RefSeq transcript (Entrez)NM_002274 NM_153490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT13
Cluster EST : UnigeneHs.654550 [ NCBI ]
CGAP (NCI)Hs.654550
Alternative Splicing GalleryENSG00000171401
Gene ExpressionKRT13 [ NCBI-GEO ]   KRT13 [ EBI - ARRAY_EXPRESS ]   KRT13 [ SEEK ]   KRT13 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3860
GTEX Portal (Tissue expression)KRT13
Human Protein AtlasENSG00000171401-KRT13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13646   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP13646  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP13646
Splice isoforms : SwissVarP13646
PhosPhoSitePlusP13646
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT13
DMDM Disease mutations3860
Blocks (Seattle)KRT13
SuperfamilyP13646
Human Protein Atlas [tissue]ENSG00000171401-KRT13 [tissue]
Peptide AtlasP13646
HPRD01016
IPIIPI00009866   IPI00550661   IPI00171196   IPI00930614   IPI00952922   
Protein Interaction databases
DIP (DOE-UCLA)P13646
IntAct (EBI)P13646
FunCoupENSG00000171401
BioGRIDKRT13
STRING (EMBL)KRT13
ZODIACKRT13
Ontologies - Pathways
QuickGOP13646
Ontology : AmiGOstructural molecule activity  protein binding  nucleus  cytosol  cytoskeleton organization  response to radiation  keratinization  tongue morphogenesis  keratin filament  intermediate filament cytoskeleton  extracellular exosome  cornification  cellular response to retinoic acid  
Ontology : EGO-EBIstructural molecule activity  protein binding  nucleus  cytosol  cytoskeleton organization  response to radiation  keratinization  tongue morphogenesis  keratin filament  intermediate filament cytoskeleton  extracellular exosome  cornification  cellular response to retinoic acid  
Pathways : KEGGCell Communication   
NDEx NetworkKRT13
Atlas of Cancer Signalling NetworkKRT13
Wikipedia pathwaysKRT13
Orthology - Evolution
OrthoDB3860
GeneTree (enSembl)ENSG00000171401
Phylogenetic Trees/Animal Genes : TreeFamKRT13
HOVERGENP13646
HOGENOMP13646
Homologs : HomoloGeneKRT13
Homology/Alignments : Family Browser (UCSC)KRT13
Gene fusions - Rearrangements
Fusion : MitelmanGAPDH/KRT13 [12p13.31/17q21.2]  [t(12;17)(p13;q21)]  
Fusion : QuiverKRT13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT13
dbVarKRT13
ClinVarKRT13
1000_GenomesKRT13 
Exome Variant ServerKRT13
ExAC (Exome Aggregation Consortium)ENSG00000171401
GNOMAD BrowserENSG00000171401
Genetic variants : HAPMAP3860
Genomic Variants (DGV)KRT13 [DGVbeta]
DECIPHERKRT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT13 
Mutations
ICGC Data PortalKRT13 
TCGA Data PortalKRT13 
Broad Tumor PortalKRT13
OASIS PortalKRT13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT13
DgiDB (Drug Gene Interaction Database)KRT13
DoCM (Curated mutations)KRT13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT13 (select a term)
intoGenKRT13
Cancer3DKRT13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM148065    615785   
Orphanet17935   
DisGeNETKRT13
MedgenKRT13
Genetic Testing Registry KRT13
NextProtP13646 [Medical]
TSGene3860
GENETestsKRT13
Target ValidationKRT13
Huge Navigator KRT13 [HugePedia]
snp3D : Map Gene to Disease3860
BioCentury BCIQKRT13
ClinGenKRT13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3860
Chemical/Pharm GKB GenePA30202
Clinical trialKRT13
Miscellaneous
canSAR (ICR)KRT13 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT13
EVEXKRT13
GoPubMedKRT13
iHOPKRT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon May 14 11:55:14 CEST 2018
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