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KRT17 (keratin 17)

Identity

Other names39.1
CK-17
K17
PC
PC2
PCHC1
HGNC (Hugo) KRT17
LocusID (NCBI) 3872
Atlas_Id 46323
Location 17q21.2
Location_base_pair Starts at 39775692 and ends at 39780882 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT17   6427
Cards
Entrez_Gene (NCBI)KRT17  3872  keratin 17
Aliases39.1; CK-17; K17; PC; 
PC2; PCHC1
GeneCards (Weizmann)KRT17
Ensembl hg19 (Hinxton)ENSG00000128422 [Gene_View]  chr17:39775692-39780882 [Contig_View]  KRT17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128422 [Gene_View]  chr17:39775692-39780882 [Contig_View]  KRT17 [Vega]
ICGC DataPortalENSG00000128422
TCGA cBioPortalKRT17
AceView (NCBI)KRT17
Genatlas (Paris)KRT17
WikiGenes3872
SOURCE (Princeton)KRT17
Genomic and cartography
GoldenPath hg19 (UCSC)KRT17  -     chr17:39775692-39780882 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT17  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT17 - 17q21.2 [CytoView hg19]  KRT17 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT17 [Mapview hg19]  KRT17 [Mapview hg38]
OMIM148069   167210   184500   
Gene and transcription
Genbank (Entrez)AK095342 AK304373 BC000159 BC011901 BC056421
RefSeq transcript (Entrez)NM_000422
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_008625 NG_009090 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT17
Cluster EST : UnigeneHs.2785 [ NCBI ]
CGAP (NCI)Hs.2785
Alternative Splicing GalleryENSG00000128422
Gene ExpressionKRT17 [ NCBI-GEO ]   KRT17 [ EBI - ARRAY_EXPRESS ]   KRT17 [ SEEK ]   KRT17 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3872
GTEX Portal (Tissue expression)KRT17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ04695 (Uniprot)
NextProtQ04695  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ04695
Splice isoforms : SwissVarQ04695 (Swissvar)
PhosPhoSitePlusQ04695
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I    Prefoldin   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3872
Blocks (Seattle)KRT17
SuperfamilyQ04695
Human Protein AtlasENSG00000128422
Peptide AtlasQ04695
HPRD01019
IPIIPI00450768   
Protein Interaction databases
DIP (DOE-UCLA)Q04695
IntAct (EBI)Q04695
FunCoupENSG00000128422
BioGRIDKRT17
STRING (EMBL)KRT17
ZODIACKRT17
Ontologies - Pathways
QuickGOQ04695
Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  cytoplasm  intermediate filament  signal transduction  epidermis development  positive regulation of cell growth  hair follicle morphogenesis  keratinization  MHC class II receptor activity  MHC class II protein binding  intermediate filament organization  positive regulation of translation  positive regulation of hair follicle development  extracellular exosome  cell periphery  
Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  cytoplasm  intermediate filament  signal transduction  epidermis development  positive regulation of cell growth  hair follicle morphogenesis  keratinization  MHC class II receptor activity  MHC class II protein binding  intermediate filament organization  positive regulation of translation  positive regulation of hair follicle development  extracellular exosome  cell periphery  
NDEx Network
Atlas of Cancer Signalling NetworkKRT17
Wikipedia pathwaysKRT17
Orthology - Evolution
OrthoDB3872
GeneTree (enSembl)ENSG00000128422
Phylogenetic Trees/Animal Genes : TreeFamKRT17
Homologs : HomoloGeneKRT17
Homology/Alignments : Family Browser (UCSC)KRT17
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKRT17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT17
dbVarKRT17
ClinVarKRT17
1000_GenomesKRT17 
Exome Variant ServerKRT17
ExAC (Exome Aggregation Consortium)KRT17 (select the gene name)
Genetic variants : HAPMAP3872
Genomic Variants (DGV)KRT17 [DGVbeta]
Mutations
ICGC Data PortalKRT17 
TCGA Data PortalKRT17 
Broad Tumor PortalKRT17
OASIS PortalKRT17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT17 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT17
DgiDB (Drug Gene Interaction Database)KRT17
DoCM (Curated mutations)KRT17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT17 (select a term)
intoGenKRT17
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:39775692-39780882  ENSG00000128422
CONAN: Copy Number AnalysisKRT17 
Mutations and Diseases : HGMDKRT17
OMIM148069    167210    184500   
MedgenKRT17
Genetic Testing Registry KRT17
NextProtQ04695 [Medical]
TSGene3872
GENETestsKRT17
Huge Navigator KRT17 [HugePedia]
snp3D : Map Gene to Disease3872
BioCentury BCIQKRT17
ClinGenKRT17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3872
Chemical/Pharm GKB GenePA30214
Clinical trialKRT17
Miscellaneous
canSAR (ICR)KRT17 (select the gene name)
Probes
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT17
EVEXKRT17
GoPubMedKRT17
iHOPKRT17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:08:17 CEST 2016

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