Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRT17 (keratin 17)

Identity

Other namesK17
PC
PC2
PCHC1
HGNC (Hugo) KRT17
LocusID (NCBI) 3872
Location 17q21.2
Location_base_pair Starts at 39775692 and ends at 39780882 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT17   6427
Cards
Entrez_Gene (NCBI)KRT17  3872  keratin 17
GeneCards (Weizmann)KRT17
Ensembl (Hinxton)ENSG00000128422 [Gene_View]  chr17:39775692-39780882 [Contig_View]  KRT17 [Vega]
ICGC DataPortalENSG00000128422
cBioPortalKRT17
AceView (NCBI)KRT17
Genatlas (Paris)KRT17
WikiGenes3872
SOURCE (Princeton)NM_000422
Genomic and cartography
GoldenPath (UCSC)KRT17  -  17q21.2   chr17:39775692-39780882 -  17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT17 - 17q21.2 [CytoView]
Mapping of homologs : NCBIKRT17 [Mapview]
OMIM148069   167210   184500   
Gene and transcription
Genbank (Entrez)AK095342 AK304373 BC000159 BC011901 BC056421
RefSeq transcript (Entrez)NM_000422
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_008625 NG_009090 NT_010783 NW_001838435 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT17
Cluster EST : UnigeneHs.2785 [ NCBI ]
CGAP (NCI)Hs.2785
Alternative Splicing : Fast-db (Paris)GSHG0013399
Alternative Splicing GalleryENSG00000128422
Gene ExpressionKRT17 [ NCBI-GEO ]     KRT17 [ SEEK ]   KRT17 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ04695 (Uniprot)
NextProtQ04695  [Medical]
With graphics : InterProQ04695
Splice isoforms : SwissVarQ04695 (Swissvar)
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF [organisation]   Intermediate_filament_CS [organisation]   Keratin_I [organisation]   Prefoldin [organisation]  
Related proteins : CluSTrQ04695
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3872
Blocks (Seattle)Q04695
Human Protein AtlasENSG00000128422 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ04695
HPRD01019
IPIIPI00450768   
Protein Interaction databases
DIP (DOE-UCLA)Q04695
IntAct (EBI)Q04695
FunCoupENSG00000128422
BioGRIDKRT17
InParanoidQ04695
Interologous Interaction database Q04695
IntegromeDBKRT17
STRING (EMBL)KRT17
Ontologies - Pathways
Ontology : AmiGOmorphogenesis of an epithelium  structural constituent of cytoskeleton  protein binding  cytoplasm  intermediate filament  signal transduction  epidermis development  positive regulation of cell growth  keratinization  MHC class II receptor activity  MHC class II protein binding  intermediate filament organization  positive regulation of translation  positive regulation of hair follicle development  cell periphery  
Ontology : EGO-EBImorphogenesis of an epithelium  structural constituent of cytoskeleton  protein binding  cytoplasm  intermediate filament  signal transduction  epidermis development  positive regulation of cell growth  keratinization  MHC class II receptor activity  MHC class II protein binding  intermediate filament organization  positive regulation of translation  positive regulation of hair follicle development  cell periphery  
Protein Interaction DatabaseKRT17
Wikipedia pathwaysKRT17
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KRT17
snp3D : Map Gene to Disease3872
SNP (GeneSNP Utah)KRT17
SNP : HGBaseKRT17
Genetic variants : HAPMAPKRT17
Exome VariantKRT17
1000_GenomesKRT17 
ICGC programENSG00000128422 
Somatic Mutations in Cancer : COSMICKRT17 
CONAN: Copy Number AnalysisKRT17 
Mutations and Diseases : HGMDKRT17
Genomic VariantsKRT17  KRT17 [DGVbeta]
dbVarKRT17
ClinVarKRT17
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM148069    167210    184500   
MedgenKRT17
GENETestsKRT17
Disease Genetic AssociationKRT17
Huge Navigator KRT17 [HugePedia]  KRT17 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneKRT17
Homology/Alignments : Family Browser (UCSC)KRT17
Phylogenetic Trees/Animal Genes : TreeFamKRT17
Chemical/Protein Interactions : CTD3872
Chemical/Pharm GKB GenePA30214
Clinical trialKRT17
Cancer Resource (Charite)ENSG00000128422
Other databases
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
CoreMineKRT17
iHOPKRT17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:02:25 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.