Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT17P5 (keratin 17 pseudogene 5)

Identity

Other alias-
HGNC (Hugo) KRT17P5
LocusID (NCBI) 339240
Atlas_Id 65012
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18422181 and ends at 18425333 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT17P5   50723
Cards
Entrez_Gene (NCBI)KRT17P5  339240  keratin 17 pseudogene 5
Aliases
GeneCards (Weizmann)KRT17P5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:18422181-18425333 [Contig_View]  KRT17P5 [Vega]
TCGA cBioPortalKRT17P5
AceView (NCBI)KRT17P5
Genatlas (Paris)KRT17P5
WikiGenes339240
SOURCE (Princeton)KRT17P5
Genetics Home Reference (NIH)KRT17P5
Genomic and cartography
GoldenPath hg38 (UCSC)KRT17P5  -     chr17:18422181-18425333 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT17P5  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblKRT17P5 - 17p11.2 [CytoView hg19]  KRT17P5 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIKRT17P5 [Mapview hg19]  KRT17P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127974 BC040601
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT17P5
Cluster EST : UnigeneHs.420616 [ NCBI ]
CGAP (NCI)Hs.420616
Gene ExpressionKRT17P5 [ NCBI-GEO ]   KRT17P5 [ EBI - ARRAY_EXPRESS ]   KRT17P5 [ SEEK ]   KRT17P5 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT17P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339240
GTEX Portal (Tissue expression)KRT17P5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRU5
Splice isoforms : SwissVarQ6ZRU5
PhosPhoSitePlusQ6ZRU5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRT17P5
DMDM Disease mutations339240
Blocks (Seattle)KRT17P5
SuperfamilyQ6ZRU5
Peptide AtlasQ6ZRU5
IPIIPI00748852   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRU5
IntAct (EBI)Q6ZRU5
BioGRIDKRT17P5
STRING (EMBL)KRT17P5
ZODIACKRT17P5
Ontologies - Pathways
QuickGOQ6ZRU5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkKRT17P5
Atlas of Cancer Signalling NetworkKRT17P5
Wikipedia pathwaysKRT17P5
Orthology - Evolution
OrthoDB339240
Phylogenetic Trees/Animal Genes : TreeFamKRT17P5
HOVERGENQ6ZRU5
HOGENOMQ6ZRU5
Homologs : HomoloGeneKRT17P5
Homology/Alignments : Family Browser (UCSC)KRT17P5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT17P5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT17P5
dbVarKRT17P5
ClinVarKRT17P5
1000_GenomesKRT17P5 
Exome Variant ServerKRT17P5
ExAC (Exome Aggregation Consortium)KRT17P5 (select the gene name)
Genetic variants : HAPMAP339240
Genomic Variants (DGV)KRT17P5 [DGVbeta]
DECIPHERKRT17P5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT17P5 
Mutations
ICGC Data PortalKRT17P5 
TCGA Data PortalKRT17P5 
Broad Tumor PortalKRT17P5
OASIS PortalKRT17P5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKRT17P5
BioMutasearch KRT17P5
DgiDB (Drug Gene Interaction Database)KRT17P5
DoCM (Curated mutations)KRT17P5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT17P5 (select a term)
intoGenKRT17P5
Cancer3DKRT17P5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRT17P5
Genetic Testing Registry KRT17P5
NextProtQ6ZRU5 [Medical]
TSGene339240
GENETestsKRT17P5
Target ValidationKRT17P5
Huge Navigator KRT17P5 [HugePedia]
snp3D : Map Gene to Disease339240
BioCentury BCIQKRT17P5
ClinGenKRT17P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339240
Clinical trialKRT17P5
Miscellaneous
canSAR (ICR)KRT17P5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT17P5
EVEXKRT17P5
GoPubMedKRT17P5
iHOPKRT17P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:07 CEST 2017

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