Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KRT18 (keratin 18)

Identity

Other namesCYK18
K18
HGNC (Hugo) KRT18
LocusID (NCBI) 3875
Location 12q13.13
Location_base_pair Starts at 53342843 and ends at 53346685 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT18   6430
Entrez_Gene (NCBI)KRT18  3875  keratin 18
Cards
GeneCards (Weizmann)KRT18
Ensembl (Hinxton)ENSG00000111057 [Gene_View]  chr12:53342843-53346685 [Contig_View]  KRT18 [Vega]
AceView (NCBI)KRT18
Genatlas (Paris)KRT18
SOURCE (Stanford)NM_000224 NM_199187
Genomic and cartography
GoldenPath (UCSC)KRT18  -  12q13.13   chr12:53342843-53346685 +  12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT18 - 12q13.13 [CytoView]
Mapping of homologs : NCBIKRT18 [Mapview]
OMIM148070   215600   
Gene and transcription
Genbank (Entrez)AK129587 AK223093 AK308506 AK313988 AY762101
RefSeq transcript (SRS)NM_000224 NM_199187
RefSeq transcript (Entrez)NM_000224 NM_199187
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NG_008351 NT_029419 NW_001838059 NW_004929384
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_008351 NT_029419 NW_001838059 NW_004929384
Consensus coding sequences : CCDS (NCBI)KRT18
Cluster EST : UnigeneHs.406013 [ SRS ] Hs.406013 [ NCBI ]
CGAP (NCI)Hs.406013
Alternative Splicing : Fast-db (Paris)GSHG0006680
Alternative Splicing GalleryENSG00000111057
Gene ExpressionKRT18 [ NCBI-GEO ]   KRT18 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05783 (SRS) P05783 (Uniprot)
NextProtP05783  [Medical]
With graphics : InterProP05783
Splice isoforms : SwissVarP05783(Swissvar)
Domaine pattern : Prosite (SRS)IF (PS00226)   
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (SRS)IF    Intermediate_filament_CS    Keratin_I   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Related proteins : CluSTrP05783
Domain families : Pfam (SRS)Filament (PF00038)   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM3875
Blocks (Seattle)P05783
Human Protein AtlasENSG00000111057
HPRD01020
IPIIPI00554788   IPI00816245   IPI01022070   
Protein Interaction databases
DIP (DOE-UCLA)P05783
IntAct (EBI)P05783
FunCoupENSG00000111057
REACTOMEKRT18
Protein Interaction Database3875
BioGRIDKRT18
InParanoidP05783
Interologous Interaction database P05783
IntegromeDBKRT18
Gene fusion - rearrangments
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)KRT18
SNP (GeneSNP Utah)KRT18
SNP : HGBaseKRT18
Genetic variants : HAPMAPKRT18
Somatic Mutations in Cancer : COSMICKRT18 
CONAN: Copy Number AnalysisKRT18 
Mutations and Diseases : HGMDKRT18
OMIM148070    215600   
GENETests148070    215600   
Disease Genetic AssociationKRT18
Huge Navigator KRT18 [HugePedia]  KRT18 [HugeCancerGEM]
Genomic VariantsKRT18  KRT18 [DGVbeta]
ClinVarKRT18
snp3D : Map Gene to Disease3875
General knowledge
Homologs : HomoloGeneKRT18
Homology/Alignments : Family Browser (UCSC)KRT18
Phylogenetic Trees/Animal Genes : TreeFamKRT18
Chemical/Protein Interactions : CTD3875
Chemical/Pharm GKB GenePA30217
Clinical trialKRT18
Cancer Resource (Charite)ENSG00000111057
Ontology : AmiGOstructural molecule activity  protein binding  nucleolus  cytoplasm  microtubule organizing center  intermediate filament  apoptotic process  cell cycle  anatomical structure morphogenesis  modulation by virus of host morphology or physiology  tumor necrosis factor-mediated signaling pathway  centriolar satellite  Golgi to plasma membrane CFTR protein transport  negative regulation of apoptotic process  keratin filament  perinuclear region of cytoplasm  scaffold protein binding  
Ontology : EGO-EBIstructural molecule activity  protein binding  nucleolus  cytoplasm  microtubule organizing center  intermediate filament  apoptotic process  cell cycle  anatomical structure morphogenesis  modulation by virus of host morphology or physiology  tumor necrosis factor-mediated signaling pathway  centriolar satellite  Golgi to plasma membrane CFTR protein transport  negative regulation of apoptotic process  keratin filament  perinuclear region of cytoplasm  scaffold protein binding  
Pathways : KEGGCell Communication
Other databases
Probes
Litterature
PubMed182 Pubmed reference(s) in Entrez
PubGeneKRT18
iHOPKRT18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Dec 3 19:36:33 CET 2013
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