Atlas of Genetics and Cytogenetics in Oncology and Haematology

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KRT20 (keratin 20)

Identity

Alias_nameskeratin 20
Alias_symbol (synonym)CK20
K20
MGC35423
Other aliasCD20
CK-20
KRT21
HGNC (Hugo) KRT20
LocusID (NCBI) 54474
Atlas_Id 46557
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40875889 and ends at 40885243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT20   20412
Cards
Entrez_Gene (NCBI)KRT20  54474  keratin 20
AliasesCD20; CK-20; CK20; K20; 
KRT21
GeneCards (Weizmann)KRT20
Ensembl hg19 (Hinxton)ENSG00000171431 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171431 [Gene_View]  ENSG00000171431 [Sequence]  chr17:40875889-40885243 [Contig_View]  KRT20 [Vega]
ICGC DataPortalENSG00000171431
TCGA cBioPortalKRT20
AceView (NCBI)KRT20
Genatlas (Paris)KRT20
WikiGenes54474
SOURCE (Princeton)KRT20
Genetics Home Reference (NIH)KRT20
Genomic and cartography
GoldenPath hg38 (UCSC)KRT20  -     chr17:40875889-40885243 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT20  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT20 - 17q21.2 [CytoView hg19]  KRT20 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT20 [Mapview hg19]  KRT20 [Mapview hg38]
OMIM608218   
Gene and transcription
Genbank (Entrez)AK312744 BC031559 DA426874 DB242980 X73502
RefSeq transcript (Entrez)NM_019010
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT20
Cluster EST : UnigeneHs.84905 [ NCBI ]
CGAP (NCI)Hs.84905
Alternative Splicing GalleryENSG00000171431
Gene ExpressionKRT20 [ NCBI-GEO ]   KRT20 [ EBI - ARRAY_EXPRESS ]   KRT20 [ SEEK ]   KRT20 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54474
GTEX Portal (Tissue expression)KRT20
Human Protein AtlasENSG00000171431-KRT20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35900   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35900  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35900
Splice isoforms : SwissVarP35900
PhosPhoSitePlusP35900
Domaine pattern : Prosite (Expaxy)IF_ROD_1 (PS00226)    IF_ROD_2 (PS51842)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT20
DMDM Disease mutations54474
Blocks (Seattle)KRT20
SuperfamilyP35900
Human Protein Atlas [tissue]ENSG00000171431-KRT20 [tissue]
Peptide AtlasP35900
HPRD12193
IPIIPI00021298   
Protein Interaction databases
DIP (DOE-UCLA)P35900
IntAct (EBI)P35900
FunCoupENSG00000171431
BioGRIDKRT20
STRING (EMBL)KRT20
ZODIACKRT20
Ontologies - Pathways
QuickGOP35900
Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  cytoplasm  cytosol  cytosol  intermediate filament  apoptotic process  cellular response to starvation  keratinization  intermediate filament organization  regulation of protein secretion  cornification  
Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  cytoplasm  cytosol  cytosol  intermediate filament  apoptotic process  cellular response to starvation  keratinization  intermediate filament organization  regulation of protein secretion  cornification  
NDEx NetworkKRT20
Atlas of Cancer Signalling NetworkKRT20
Wikipedia pathwaysKRT20
Orthology - Evolution
OrthoDB54474
GeneTree (enSembl)ENSG00000171431
Phylogenetic Trees/Animal Genes : TreeFamKRT20
HOVERGENP35900
HOGENOMP35900
Homologs : HomoloGeneKRT20
Homology/Alignments : Family Browser (UCSC)KRT20
Gene fusions - Rearrangements
Fusion : QuiverKRT20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT20
dbVarKRT20
ClinVarKRT20
1000_GenomesKRT20 
Exome Variant ServerKRT20
ExAC (Exome Aggregation Consortium)ENSG00000171431
GNOMAD BrowserENSG00000171431
Varsome BrowserKRT20
Genetic variants : HAPMAP54474
Genomic Variants (DGV)KRT20 [DGVbeta]
DECIPHERKRT20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT20 
Mutations
ICGC Data PortalKRT20 
TCGA Data PortalKRT20 
Broad Tumor PortalKRT20
OASIS PortalKRT20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT20
DgiDB (Drug Gene Interaction Database)KRT20
DoCM (Curated mutations)KRT20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT20 (select a term)
intoGenKRT20
Cancer3DKRT20(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608218   
Orphanet
DisGeNETKRT20
MedgenKRT20
Genetic Testing Registry KRT20
NextProtP35900 [Medical]
TSGene54474
GENETestsKRT20
Target ValidationKRT20
Huge Navigator KRT20 [HugePedia]
snp3D : Map Gene to Disease54474
BioCentury BCIQKRT20
ClinGenKRT20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54474
Chemical/Pharm GKB GenePA134938907
Clinical trialKRT20
Miscellaneous
canSAR (ICR)KRT20 (select the gene name)
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT20
EVEXKRT20
GoPubMedKRT20
iHOPKRT20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:15:37 CET 2018
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