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KRT222 (keratin 222, type II)

Identity

Alias_namesKRT222P
keratin 222 pseudogene
keratin 222, type II
Alias_symbol (synonym)KA21
MGC45562
Other alias
HGNC (Hugo) KRT222
LocusID (NCBI) 125113
Atlas_Id 65016
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 38811872 and ends at 38821416 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DGKE (17q22) / KRT222 (17q21.2)MED1 (17q12) / KRT222 (17q21.2)RPL4 (15q22.31) / KRT222 (17q21.2)
DGKE KRT222MED1 KRT222

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT222   28695
Cards
Entrez_Gene (NCBI)KRT222  125113  keratin 222, type II
AliasesKA21; KRT222P
GeneCards (Weizmann)KRT222
Ensembl hg19 (Hinxton)ENSG00000213424 [Gene_View]  chr17:38811872-38821416 [Contig_View]  KRT222 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213424 [Gene_View]  chr17:38811872-38821416 [Contig_View]  KRT222 [Vega]
ICGC DataPortalENSG00000213424
TCGA cBioPortalKRT222
AceView (NCBI)KRT222
Genatlas (Paris)KRT222
WikiGenes125113
SOURCE (Princeton)KRT222
Genetics Home Reference (NIH)KRT222
Genomic and cartography
GoldenPath hg19 (UCSC)KRT222  -     chr17:38811872-38821416 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT222  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT222 - 17q21.2 [CytoView hg19]  KRT222 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT222 [Mapview hg19]  KRT222 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK308598 BC032815 BX538083 CV570846 DB465511
RefSeq transcript (Entrez)NM_152349
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT222
Cluster EST : UnigeneHs.6920 [ NCBI ]
CGAP (NCI)Hs.6920
Alternative Splicing GalleryENSG00000213424
Gene ExpressionKRT222 [ NCBI-GEO ]   KRT222 [ EBI - ARRAY_EXPRESS ]   KRT222 [ SEEK ]   KRT222 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT222 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125113
GTEX Portal (Tissue expression)KRT222
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1A0
Splice isoforms : SwissVarQ8N1A0
PhosPhoSitePlusQ8N1A0
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)KRT222
DMDM Disease mutations125113
Blocks (Seattle)KRT222
SuperfamilyQ8N1A0
Human Protein AtlasENSG00000213424
Peptide AtlasQ8N1A0
HPRD11354
IPIIPI00166126   IPI00790226   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1A0
IntAct (EBI)Q8N1A0
FunCoupENSG00000213424
BioGRIDKRT222
STRING (EMBL)KRT222
ZODIACKRT222
Ontologies - Pathways
QuickGOQ8N1A0
Ontology : AmiGOstructural molecule activity  intermediate filament  
Ontology : EGO-EBIstructural molecule activity  intermediate filament  
NDEx NetworkKRT222
Atlas of Cancer Signalling NetworkKRT222
Wikipedia pathwaysKRT222
Orthology - Evolution
OrthoDB125113
GeneTree (enSembl)ENSG00000213424
Phylogenetic Trees/Animal Genes : TreeFamKRT222
HOVERGENQ8N1A0
HOGENOMQ8N1A0
Homologs : HomoloGeneKRT222
Homology/Alignments : Family Browser (UCSC)KRT222
Gene fusions - Rearrangements
Fusion: TCGADGKE KRT222
Fusion: TCGAMED1 KRT222
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT222 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT222
dbVarKRT222
ClinVarKRT222
1000_GenomesKRT222 
Exome Variant ServerKRT222
ExAC (Exome Aggregation Consortium)KRT222 (select the gene name)
Genetic variants : HAPMAP125113
Genomic Variants (DGV)KRT222 [DGVbeta]
DECIPHER (Syndromes)17:38811872-38821416  ENSG00000213424
CONAN: Copy Number AnalysisKRT222 
Mutations
ICGC Data PortalKRT222 
TCGA Data PortalKRT222 
Broad Tumor PortalKRT222
OASIS PortalKRT222 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT222  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT222
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT222
DgiDB (Drug Gene Interaction Database)KRT222
DoCM (Curated mutations)KRT222 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT222 (select a term)
intoGenKRT222
Cancer3DKRT222(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRT222
Genetic Testing Registry KRT222
NextProtQ8N1A0 [Medical]
TSGene125113
GENETestsKRT222
Huge Navigator KRT222 [HugePedia]
snp3D : Map Gene to Disease125113
BioCentury BCIQKRT222
ClinGenKRT222
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125113
Chemical/Pharm GKB GenePA165432008
Clinical trialKRT222
Miscellaneous
canSAR (ICR)KRT222 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT222
EVEXKRT222
GoPubMedKRT222
iHOPKRT222
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:10:11 CET 2017

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