Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT23 (keratin 23)

Identity

Alias_nameskeratin 23 (histone deacetylase inducible)
keratin 23, type I
Alias_symbol (synonym)K23
DKFZP434G032
HAIK1
CK23
MGC26158
Other alias
HGNC (Hugo) KRT23
LocusID (NCBI) 25984
Atlas_Id 50983
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39078948 and ends at 39093895 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KRT23 (17q21.2) / KIRREL (1q23.1)PHOSPHO1 (17q21.32) / KRT23 (17q21.2)SPRR1A (1q21.3) / KRT23 (17q21.2)
PHOSPHO1 17q21.32 / KRT23 17q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT23   6438
Cards
Entrez_Gene (NCBI)KRT23  25984  keratin 23
AliasesCK23; HAIK1; K23
GeneCards (Weizmann)KRT23
Ensembl hg19 (Hinxton)ENSG00000108244 [Gene_View]  chr17:39078948-39093895 [Contig_View]  KRT23 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108244 [Gene_View]  chr17:39078948-39093895 [Contig_View]  KRT23 [Vega]
ICGC DataPortalENSG00000108244
TCGA cBioPortalKRT23
AceView (NCBI)KRT23
Genatlas (Paris)KRT23
WikiGenes25984
SOURCE (Princeton)KRT23
Genetics Home Reference (NIH)KRT23
Genomic and cartography
GoldenPath hg19 (UCSC)KRT23  -     chr17:39078948-39093895 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT23  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT23 - 17q21.2 [CytoView hg19]  KRT23 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT23 [Mapview hg19]  KRT23 [Mapview hg38]
OMIM606194   
Gene and transcription
Genbank (Entrez)AA649738 AF102848 AK002047 AK225866 AK289449
RefSeq transcript (Entrez)NM_001282433 NM_015515 NM_173213
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_012287 NT_010783 NW_003871091 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT23
Cluster EST : UnigeneHs.9029 [ NCBI ]
CGAP (NCI)Hs.9029
Alternative Splicing GalleryENSG00000108244
Gene ExpressionKRT23 [ NCBI-GEO ]   KRT23 [ EBI - ARRAY_EXPRESS ]   KRT23 [ SEEK ]   KRT23 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25984
GTEX Portal (Tissue expression)KRT23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C075   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C075  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C075
Splice isoforms : SwissVarQ9C075
PhosPhoSitePlusQ9C075
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)KRT23
DMDM Disease mutations25984
Blocks (Seattle)KRT23
SuperfamilyQ9C075
Human Protein AtlasENSG00000108244
Peptide AtlasQ9C075
HPRD05863
IPIIPI00304458   IPI00552387   IPI00243338   
Protein Interaction databases
DIP (DOE-UCLA)Q9C075
IntAct (EBI)Q9C075
FunCoupENSG00000108244
BioGRIDKRT23
STRING (EMBL)KRT23
ZODIACKRT23
Ontologies - Pathways
QuickGOQ9C075
Ontology : AmiGOstructural molecule activity  intermediate filament  
Ontology : EGO-EBIstructural molecule activity  intermediate filament  
NDEx NetworkKRT23
Atlas of Cancer Signalling NetworkKRT23
Wikipedia pathwaysKRT23
Orthology - Evolution
OrthoDB25984
GeneTree (enSembl)ENSG00000108244
Phylogenetic Trees/Animal Genes : TreeFamKRT23
HOVERGENQ9C075
HOGENOMQ9C075
Homologs : HomoloGeneKRT23
Homology/Alignments : Family Browser (UCSC)KRT23
Gene fusions - Rearrangements
Fusion : MitelmanPHOSPHO1/KRT23 [17q21.32/17q21.2]  [t(17;17)(q21;q21)]  
Fusion: TCGAPHOSPHO1 17q21.32 KRT23 17q21.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT23
dbVarKRT23
ClinVarKRT23
1000_GenomesKRT23 
Exome Variant ServerKRT23
ExAC (Exome Aggregation Consortium)KRT23 (select the gene name)
Genetic variants : HAPMAP25984
Genomic Variants (DGV)KRT23 [DGVbeta]
DECIPHER (Syndromes)17:39078948-39093895  ENSG00000108244
CONAN: Copy Number AnalysisKRT23 
Mutations
ICGC Data PortalKRT23 
TCGA Data PortalKRT23 
Broad Tumor PortalKRT23
OASIS PortalKRT23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT23
DgiDB (Drug Gene Interaction Database)KRT23
DoCM (Curated mutations)KRT23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT23 (select a term)
intoGenKRT23
Cancer3DKRT23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606194   
Orphanet
MedgenKRT23
Genetic Testing Registry KRT23
NextProtQ9C075 [Medical]
TSGene25984
GENETestsKRT23
Huge Navigator KRT23 [HugePedia]
snp3D : Map Gene to Disease25984
BioCentury BCIQKRT23
ClinGenKRT23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25984
Chemical/Pharm GKB GenePA134914537
Clinical trialKRT23
Miscellaneous
canSAR (ICR)KRT23 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT23
EVEXKRT23
GoPubMedKRT23
iHOPKRT23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:17 CET 2017

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