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KRT25 (keratin 25)

Identity

Alias_namesKRT25A
keratin 25A
keratin 25, type I
Other aliasARWH3
KRT24IRS1
HGNC (Hugo) KRT25
LocusID (NCBI) 147183
Atlas_Id 65018
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40748021 and ends at 40755332 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT25   30839
Cards
Entrez_Gene (NCBI)KRT25  147183  keratin 25
AliasesARWH3; KRT24IRS1; KRT25A
GeneCards (Weizmann)KRT25
Ensembl hg19 (Hinxton)ENSG00000204897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204897 [Gene_View]  chr17:40748021-40755332 [Contig_View]  KRT25 [Vega]
ICGC DataPortalENSG00000204897
TCGA cBioPortalKRT25
AceView (NCBI)KRT25
Genatlas (Paris)KRT25
WikiGenes147183
SOURCE (Princeton)KRT25
Genetics Home Reference (NIH)KRT25
Genomic and cartography
GoldenPath hg38 (UCSC)KRT25  -     chr17:40748021-40755332 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT25  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT25 - 17q21.2 [CytoView hg19]  KRT25 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT25 [Mapview hg19]  KRT25 [Mapview hg38]
OMIM616646   616760   
Gene and transcription
Genbank (Entrez)AJ564204 AK129503 BC140408 BC146488
RefSeq transcript (Entrez)NM_181534
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT25
Cluster EST : UnigeneHs.55412 [ NCBI ]
CGAP (NCI)Hs.55412
Alternative Splicing GalleryENSG00000204897
Gene ExpressionKRT25 [ NCBI-GEO ]   KRT25 [ EBI - ARRAY_EXPRESS ]   KRT25 [ SEEK ]   KRT25 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147183
GTEX Portal (Tissue expression)KRT25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3Z0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3Z0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3Z0
Splice isoforms : SwissVarQ7Z3Z0
PhosPhoSitePlusQ7Z3Z0
Domains : Interpro (EBI)IF    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT25
DMDM Disease mutations147183
Blocks (Seattle)KRT25
SuperfamilyQ7Z3Z0
Human Protein AtlasENSG00000204897
Peptide AtlasQ7Z3Z0
HPRD17242
IPIIPI00375911   IPI00791576   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3Z0
IntAct (EBI)Q7Z3Z0
FunCoupENSG00000204897
BioGRIDKRT25
STRING (EMBL)KRT25
ZODIACKRT25
Ontologies - Pathways
QuickGOQ7Z3Z0
Ontology : AmiGOmolecular_function  structural molecule activity  cytosol  intermediate filament  cytoskeleton organization  aging  hair follicle morphogenesis  keratinization  hair cycle  intermediate filament organization  protein heterodimerization activity  extracellular exosome  cornification  
Ontology : EGO-EBImolecular_function  structural molecule activity  cytosol  intermediate filament  cytoskeleton organization  aging  hair follicle morphogenesis  keratinization  hair cycle  intermediate filament organization  protein heterodimerization activity  extracellular exosome  cornification  
NDEx NetworkKRT25
Atlas of Cancer Signalling NetworkKRT25
Wikipedia pathwaysKRT25
Orthology - Evolution
OrthoDB147183
GeneTree (enSembl)ENSG00000204897
Phylogenetic Trees/Animal Genes : TreeFamKRT25
HOVERGENQ7Z3Z0
HOGENOMQ7Z3Z0
Homologs : HomoloGeneKRT25
Homology/Alignments : Family Browser (UCSC)KRT25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT25
dbVarKRT25
ClinVarKRT25
1000_GenomesKRT25 
Exome Variant ServerKRT25
ExAC (Exome Aggregation Consortium)KRT25 (select the gene name)
Genetic variants : HAPMAP147183
Genomic Variants (DGV)KRT25 [DGVbeta]
DECIPHERKRT25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT25 
Mutations
ICGC Data PortalKRT25 
TCGA Data PortalKRT25 
Broad Tumor PortalKRT25
OASIS PortalKRT25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT25
DgiDB (Drug Gene Interaction Database)KRT25
DoCM (Curated mutations)KRT25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT25 (select a term)
intoGenKRT25
Cancer3DKRT25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616646    616760   
Orphanet8571   
MedgenKRT25
Genetic Testing Registry KRT25
NextProtQ7Z3Z0 [Medical]
TSGene147183
GENETestsKRT25
Huge Navigator KRT25 [HugePedia]
snp3D : Map Gene to Disease147183
BioCentury BCIQKRT25
ClinGenKRT25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147183
Chemical/Pharm GKB GenePA134977088
Clinical trialKRT25
Miscellaneous
canSAR (ICR)KRT25 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT25
EVEXKRT25
GoPubMedKRT25
iHOPKRT25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:18:27 CEST 2017

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