Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRT28 (keratin 28)

Identity

Alias_namesKRT25D
keratin 25D
keratin 28, type I
Other aliasK25IRS4
HGNC (Hugo) KRT28
LocusID (NCBI) 162605
Atlas_Id 65021
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40792196 and ends at 40799959 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT28   30842
Cards
Entrez_Gene (NCBI)KRT28  162605  keratin 28
AliasesK25IRS4; KRT25D
GeneCards (Weizmann)KRT28
Ensembl hg19 (Hinxton)ENSG00000173908 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173908 [Gene_View]  chr17:40792196-40799959 [Contig_View]  KRT28 [Vega]
ICGC DataPortalENSG00000173908
TCGA cBioPortalKRT28
AceView (NCBI)KRT28
Genatlas (Paris)KRT28
WikiGenes162605
SOURCE (Princeton)KRT28
Genetics Home Reference (NIH)KRT28
Genomic and cartography
GoldenPath hg38 (UCSC)KRT28  -     chr17:40792196-40799959 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT28  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT28 - 17q21.2 [CytoView hg19]  KRT28 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT28 [Mapview hg19]  KRT28 [Mapview hg38]
OMIM616677   
Gene and transcription
Genbank (Entrez)AJ564207 AK129827 BC146368 BC148794
RefSeq transcript (Entrez)NM_181535
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT28
Cluster EST : UnigeneHs.59736 [ NCBI ]
CGAP (NCI)Hs.59736
Alternative Splicing GalleryENSG00000173908
Gene ExpressionKRT28 [ NCBI-GEO ]   KRT28 [ EBI - ARRAY_EXPRESS ]   KRT28 [ SEEK ]   KRT28 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162605
GTEX Portal (Tissue expression)KRT28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3Y7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3Y7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3Y7
Splice isoforms : SwissVarQ7Z3Y7
PhosPhoSitePlusQ7Z3Y7
Domains : Interpro (EBI)IF    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT28
DMDM Disease mutations162605
Blocks (Seattle)KRT28
SuperfamilyQ7Z3Y7
Human Protein AtlasENSG00000173908
Peptide AtlasQ7Z3Y7
HPRD17245
IPIIPI00418663   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3Y7
IntAct (EBI)Q7Z3Y7
FunCoupENSG00000173908
BioGRIDKRT28
STRING (EMBL)KRT28
ZODIACKRT28
Ontologies - Pathways
QuickGOQ7Z3Y7
Ontology : AmiGOmolecular_function  structural molecule activity  cytosol  intermediate filament  biological_process  keratinization  extracellular exosome  cornification  
Ontology : EGO-EBImolecular_function  structural molecule activity  cytosol  intermediate filament  biological_process  keratinization  extracellular exosome  cornification  
NDEx NetworkKRT28
Atlas of Cancer Signalling NetworkKRT28
Wikipedia pathwaysKRT28
Orthology - Evolution
OrthoDB162605
GeneTree (enSembl)ENSG00000173908
Phylogenetic Trees/Animal Genes : TreeFamKRT28
HOVERGENQ7Z3Y7
HOGENOMQ7Z3Y7
Homologs : HomoloGeneKRT28
Homology/Alignments : Family Browser (UCSC)KRT28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT28
dbVarKRT28
ClinVarKRT28
1000_GenomesKRT28 
Exome Variant ServerKRT28
ExAC (Exome Aggregation Consortium)KRT28 (select the gene name)
Genetic variants : HAPMAP162605
Genomic Variants (DGV)KRT28 [DGVbeta]
DECIPHERKRT28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT28 
Mutations
ICGC Data PortalKRT28 
TCGA Data PortalKRT28 
Broad Tumor PortalKRT28
OASIS PortalKRT28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT28
DgiDB (Drug Gene Interaction Database)KRT28
DoCM (Curated mutations)KRT28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT28 (select a term)
intoGenKRT28
Cancer3DKRT28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616677   
Orphanet
MedgenKRT28
Genetic Testing Registry KRT28
NextProtQ7Z3Y7 [Medical]
TSGene162605
GENETestsKRT28
Target ValidationKRT28
Huge Navigator KRT28 [HugePedia]
snp3D : Map Gene to Disease162605
BioCentury BCIQKRT28
ClinGenKRT28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162605
Chemical/Pharm GKB GenePA134871316
Clinical trialKRT28
Miscellaneous
canSAR (ICR)KRT28 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT28
EVEXKRT28
GoPubMedKRT28
iHOPKRT28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:18:39 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.