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KRT31 (keratin 31)

Identity

Alias_namesKRTHA1
keratin, hair, acidic, 1
keratin 31, type I
Alias_symbol (synonym)Ha-1
Other aliasHA1
hHa1
HGNC (Hugo) KRT31
LocusID (NCBI) 3881
Atlas_Id 65023
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41393725 and ends at 41397592 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT31   6448
Cards
Entrez_Gene (NCBI)KRT31  3881  keratin 31
AliasesHA1; Ha-1; KRTHA1; hHa1
GeneCards (Weizmann)KRT31
Ensembl hg19 (Hinxton)ENSG00000094796 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000094796 [Gene_View]  chr17:41393725-41397592 [Contig_View]  KRT31 [Vega]
ICGC DataPortalENSG00000094796
TCGA cBioPortalKRT31
AceView (NCBI)KRT31
Genatlas (Paris)KRT31
WikiGenes3881
SOURCE (Princeton)KRT31
Genetics Home Reference (NIH)KRT31
Genomic and cartography
GoldenPath hg38 (UCSC)KRT31  -     chr17:41393725-41397592 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT31  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT31 - 17q21.2 [CytoView hg19]  KRT31 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT31 [Mapview hg19]  KRT31 [Mapview hg38]
OMIM601077   
Gene and transcription
Genbank (Entrez)AK313419 BC114468 X86570
RefSeq transcript (Entrez)NM_002277
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT31
Cluster EST : UnigeneHs.41696 [ NCBI ]
CGAP (NCI)Hs.41696
Alternative Splicing GalleryENSG00000094796
Gene ExpressionKRT31 [ NCBI-GEO ]   KRT31 [ EBI - ARRAY_EXPRESS ]   KRT31 [ SEEK ]   KRT31 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3881
GTEX Portal (Tissue expression)KRT31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15323   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15323  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15323
Splice isoforms : SwissVarQ15323
PhosPhoSitePlusQ15323
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT31
DMDM Disease mutations3881
Blocks (Seattle)KRT31
SuperfamilyQ15323
Human Protein AtlasENSG00000094796
Peptide AtlasQ15323
HPRD03047
IPIIPI00032513   
Protein Interaction databases
DIP (DOE-UCLA)Q15323
IntAct (EBI)Q15323
FunCoupENSG00000094796
BioGRIDKRT31
STRING (EMBL)KRT31
ZODIACKRT31
Ontologies - Pathways
QuickGOQ15323
Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  extracellular space  cytosol  intermediate filament  cytoskeleton organization  epidermis development  keratinization  extracellular exosome  cornification  
Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  extracellular space  cytosol  intermediate filament  cytoskeleton organization  epidermis development  keratinization  extracellular exosome  cornification  
NDEx NetworkKRT31
Atlas of Cancer Signalling NetworkKRT31
Wikipedia pathwaysKRT31
Orthology - Evolution
OrthoDB3881
GeneTree (enSembl)ENSG00000094796
Phylogenetic Trees/Animal Genes : TreeFamKRT31
HOVERGENQ15323
HOGENOMQ15323
Homologs : HomoloGeneKRT31
Homology/Alignments : Family Browser (UCSC)KRT31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT31
dbVarKRT31
ClinVarKRT31
1000_GenomesKRT31 
Exome Variant ServerKRT31
ExAC (Exome Aggregation Consortium)KRT31 (select the gene name)
Genetic variants : HAPMAP3881
Genomic Variants (DGV)KRT31 [DGVbeta]
DECIPHERKRT31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT31 
Mutations
ICGC Data PortalKRT31 
TCGA Data PortalKRT31 
Broad Tumor PortalKRT31
OASIS PortalKRT31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT31
DgiDB (Drug Gene Interaction Database)KRT31
DoCM (Curated mutations)KRT31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT31 (select a term)
intoGenKRT31
Cancer3DKRT31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601077   
Orphanet
MedgenKRT31
Genetic Testing Registry KRT31
NextProtQ15323 [Medical]
TSGene3881
GENETestsKRT31
Target ValidationKRT31
Huge Navigator KRT31 [HugePedia]
snp3D : Map Gene to Disease3881
BioCentury BCIQKRT31
ClinGenKRT31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3881
Chemical/Pharm GKB GenePA30237
Clinical trialKRT31
Miscellaneous
canSAR (ICR)KRT31 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT31
EVEXKRT31
GoPubMedKRT31
iHOPKRT31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:09 CEST 2017

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