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KRT32 (keratin 32)

Identity

Alias_namesKRTHA2
keratin, hair, acidic, 2
keratin 32, type I
Alias_symbol (synonym)Ha-2
Other aliasHA2
HKA2
hHa2
HGNC (Hugo) KRT32
LocusID (NCBI) 3882
Atlas_Id 65024
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41459513 and ends at 41467386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SEPT9 (17q25.2) / KRT32 (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT32   6449
Cards
Entrez_Gene (NCBI)KRT32  3882  keratin 32
AliasesHA2; HKA2; KRTHA2; hHa2
GeneCards (Weizmann)KRT32
Ensembl hg19 (Hinxton)ENSG00000108759 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108759 [Gene_View]  chr17:41459513-41467386 [Contig_View]  KRT32 [Vega]
ICGC DataPortalENSG00000108759
TCGA cBioPortalKRT32
AceView (NCBI)KRT32
Genatlas (Paris)KRT32
WikiGenes3882
SOURCE (Princeton)KRT32
Genetics Home Reference (NIH)KRT32
Genomic and cartography
GoldenPath hg38 (UCSC)KRT32  -     chr17:41459513-41467386 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT32  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT32 - 17q21.2 [CytoView hg19]  KRT32 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT32 [Mapview hg19]  KRT32 [Mapview hg38]
OMIM602760   
Gene and transcription
Genbank (Entrez)AI190798 BC146286 BC148740 X81419
RefSeq transcript (Entrez)NM_002278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT32
Cluster EST : UnigeneHs.41752 [ NCBI ]
CGAP (NCI)Hs.41752
Alternative Splicing GalleryENSG00000108759
Gene ExpressionKRT32 [ NCBI-GEO ]   KRT32 [ EBI - ARRAY_EXPRESS ]   KRT32 [ SEEK ]   KRT32 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3882
GTEX Portal (Tissue expression)KRT32
Human Protein AtlasENSG00000108759-KRT32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14532   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14532  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14532
Splice isoforms : SwissVarQ14532
PhosPhoSitePlusQ14532
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)Growth_fac_rcpt_    IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT32
DMDM Disease mutations3882
Blocks (Seattle)KRT32
SuperfamilyQ14532
Human Protein Atlas [tissue]ENSG00000108759-KRT32 [tissue]
Peptide AtlasQ14532
HPRD04134
IPIIPI00291540   
Protein Interaction databases
DIP (DOE-UCLA)Q14532
IntAct (EBI)Q14532
FunCoupENSG00000108759
BioGRIDKRT32
STRING (EMBL)KRT32
ZODIACKRT32
Ontologies - Pathways
QuickGOQ14532
Ontology : AmiGOstructural molecule activity  cytosol  intermediate filament  epidermis development  keratinization  extracellular exosome  cornification  
Ontology : EGO-EBIstructural molecule activity  cytosol  intermediate filament  epidermis development  keratinization  extracellular exosome  cornification  
NDEx NetworkKRT32
Atlas of Cancer Signalling NetworkKRT32
Wikipedia pathwaysKRT32
Orthology - Evolution
OrthoDB3882
GeneTree (enSembl)ENSG00000108759
Phylogenetic Trees/Animal Genes : TreeFamKRT32
HOVERGENQ14532
HOGENOMQ14532
Homologs : HomoloGeneKRT32
Homology/Alignments : Family Browser (UCSC)KRT32
Gene fusions - Rearrangements
Tumor Fusion PortalKRT32
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT32
dbVarKRT32
ClinVarKRT32
1000_GenomesKRT32 
Exome Variant ServerKRT32
ExAC (Exome Aggregation Consortium)ENSG00000108759
GNOMAD BrowserENSG00000108759
Genetic variants : HAPMAP3882
Genomic Variants (DGV)KRT32 [DGVbeta]
DECIPHERKRT32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT32 
Mutations
ICGC Data PortalKRT32 
TCGA Data PortalKRT32 
Broad Tumor PortalKRT32
OASIS PortalKRT32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT32
DgiDB (Drug Gene Interaction Database)KRT32
DoCM (Curated mutations)KRT32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT32 (select a term)
intoGenKRT32
Cancer3DKRT32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602760   
Orphanet
DisGeNETKRT32
MedgenKRT32
Genetic Testing Registry KRT32
NextProtQ14532 [Medical]
TSGene3882
GENETestsKRT32
Target ValidationKRT32
Huge Navigator KRT32 [HugePedia]
snp3D : Map Gene to Disease3882
BioCentury BCIQKRT32
ClinGenKRT32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3882
Chemical/Pharm GKB GenePA30238
Clinical trialKRT32
Miscellaneous
canSAR (ICR)KRT32 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT32
EVEXKRT32
GoPubMedKRT32
iHOPKRT32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:35:35 CET 2017

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