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KRT33A (keratin 33A)

Identity

Alias_namesKRTHA3A
keratin, hair, acidic, 3A
keratin 33A, type I
Alias_symbol (synonym)Ha-3I
Krt1-3
Other aliasHA3I
K33A
hHa3-I
HGNC (Hugo) KRT33A
LocusID (NCBI) 3883
Atlas_Id 65025
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41346093 and ends at 41350812 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SYNRG (17q12) / KRT33A (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT33A   6450
Cards
Entrez_Gene (NCBI)KRT33A  3883  keratin 33A
AliasesHA3I; Ha-3I; K33A; KRTHA3A; 
Krt1-3; hHa3-I
GeneCards (Weizmann)KRT33A
Ensembl hg19 (Hinxton)ENSG00000006059 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006059 [Gene_View]  chr17:41346093-41350812 [Contig_View]  KRT33A [Vega]
ICGC DataPortalENSG00000006059
TCGA cBioPortalKRT33A
AceView (NCBI)KRT33A
Genatlas (Paris)KRT33A
WikiGenes3883
SOURCE (Princeton)KRT33A
Genetics Home Reference (NIH)KRT33A
Genomic and cartography
GoldenPath hg38 (UCSC)KRT33A  -     chr17:41346093-41350812 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT33A  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT33A - 17q21.2 [CytoView hg19]  KRT33A - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT33A [Mapview hg19]  KRT33A [Mapview hg38]
OMIM602761   
Gene and transcription
Genbank (Entrez)AJ633621 AK314088 BC069135
RefSeq transcript (Entrez)NM_004138
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT33A
Cluster EST : UnigeneHs.512579 [ NCBI ]
CGAP (NCI)Hs.512579
Alternative Splicing GalleryENSG00000006059
Gene ExpressionKRT33A [ NCBI-GEO ]   KRT33A [ EBI - ARRAY_EXPRESS ]   KRT33A [ SEEK ]   KRT33A [ MEM ]
Gene Expression Viewer (FireBrowse)KRT33A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3883
GTEX Portal (Tissue expression)KRT33A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76009   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76009  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76009
Splice isoforms : SwissVarO76009
PhosPhoSitePlusO76009
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT33A
DMDM Disease mutations3883
Blocks (Seattle)KRT33A
SuperfamilyO76009
Human Protein AtlasENSG00000006059
Peptide AtlasO76009
HPRD04135
IPIIPI00297632   
Protein Interaction databases
DIP (DOE-UCLA)O76009
IntAct (EBI)O76009
FunCoupENSG00000006059
BioGRIDKRT33A
STRING (EMBL)KRT33A
ZODIACKRT33A
Ontologies - Pathways
QuickGOO76009
Ontology : AmiGOstructural molecule activity  extracellular space  cytosol  intermediate filament  keratinization  cornification  
Ontology : EGO-EBIstructural molecule activity  extracellular space  cytosol  intermediate filament  keratinization  cornification  
NDEx NetworkKRT33A
Atlas of Cancer Signalling NetworkKRT33A
Wikipedia pathwaysKRT33A
Orthology - Evolution
OrthoDB3883
GeneTree (enSembl)ENSG00000006059
Phylogenetic Trees/Animal Genes : TreeFamKRT33A
HOVERGENO76009
HOGENOMO76009
Homologs : HomoloGeneKRT33A
Homology/Alignments : Family Browser (UCSC)KRT33A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT33A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT33A
dbVarKRT33A
ClinVarKRT33A
1000_GenomesKRT33A 
Exome Variant ServerKRT33A
ExAC (Exome Aggregation Consortium)KRT33A (select the gene name)
Genetic variants : HAPMAP3883
Genomic Variants (DGV)KRT33A [DGVbeta]
DECIPHERKRT33A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT33A 
Mutations
ICGC Data PortalKRT33A 
TCGA Data PortalKRT33A 
Broad Tumor PortalKRT33A
OASIS PortalKRT33A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT33A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT33A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT33A
DgiDB (Drug Gene Interaction Database)KRT33A
DoCM (Curated mutations)KRT33A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT33A (select a term)
intoGenKRT33A
Cancer3DKRT33A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602761   
Orphanet
MedgenKRT33A
Genetic Testing Registry KRT33A
NextProtO76009 [Medical]
TSGene3883
GENETestsKRT33A
Target ValidationKRT33A
Huge Navigator KRT33A [HugePedia]
snp3D : Map Gene to Disease3883
BioCentury BCIQKRT33A
ClinGenKRT33A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3883
Chemical/Pharm GKB GenePA30239
Clinical trialKRT33A
Miscellaneous
canSAR (ICR)KRT33A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT33A
EVEXKRT33A
GoPubMedKRT33A
iHOPKRT33A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:59 CEST 2017

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