Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT33B (keratin 33B)

Identity

Alias_namesKRTHA3B
keratin, hair, acidic, 3B
keratin 33B, type I
Alias_symbol (synonym)Ha-3II
Other aliasHA3II
K33B
KRTHA3A
hHa3-II
HGNC (Hugo) KRT33B
LocusID (NCBI) 3884
Atlas_Id 65026
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41363494 and ends at 41369800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT33B   6451
Cards
Entrez_Gene (NCBI)KRT33B  3884  keratin 33B
AliasesHA3II; Ha-3II; K33B; KRTHA3A; 
KRTHA3B; hHa3-II
GeneCards (Weizmann)KRT33B
Ensembl hg19 (Hinxton)ENSG00000131738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131738 [Gene_View]  chr17:41363494-41369800 [Contig_View]  KRT33B [Vega]
ICGC DataPortalENSG00000131738
TCGA cBioPortalKRT33B
AceView (NCBI)KRT33B
Genatlas (Paris)KRT33B
WikiGenes3884
SOURCE (Princeton)KRT33B
Genetics Home Reference (NIH)KRT33B
Genomic and cartography
GoldenPath hg38 (UCSC)KRT33B  -     chr17:41363494-41369800 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT33B  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT33B - 17q21.2 [CytoView hg19]  KRT33B - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT33B [Mapview hg19]  KRT33B [Mapview hg38]
OMIM602762   
Gene and transcription
Genbank (Entrez)BC009971 DQ893452 DQ896286 X82634
RefSeq transcript (Entrez)NM_002279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT33B
Cluster EST : UnigeneHs.32950 [ NCBI ]
CGAP (NCI)Hs.32950
Alternative Splicing GalleryENSG00000131738
Gene ExpressionKRT33B [ NCBI-GEO ]   KRT33B [ EBI - ARRAY_EXPRESS ]   KRT33B [ SEEK ]   KRT33B [ MEM ]
Gene Expression Viewer (FireBrowse)KRT33B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3884
GTEX Portal (Tissue expression)KRT33B
Human Protein AtlasENSG00000131738-KRT33B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14525   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14525  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14525
Splice isoforms : SwissVarQ14525
PhosPhoSitePlusQ14525
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT33B
DMDM Disease mutations3884
Blocks (Seattle)KRT33B
SuperfamilyQ14525
Human Protein Atlas [tissue]ENSG00000131738-KRT33B [tissue]
Peptide AtlasQ14525
HPRD04136
IPIIPI00031423   
Protein Interaction databases
DIP (DOE-UCLA)Q14525
IntAct (EBI)Q14525
FunCoupENSG00000131738
BioGRIDKRT33B
STRING (EMBL)KRT33B
ZODIACKRT33B
Ontologies - Pathways
QuickGOQ14525
Ontology : AmiGOstructural molecule activity  protein binding  extracellular space  cytosol  intermediate filament  aging  keratinization  hair cycle  extracellular exosome  cornification  
Ontology : EGO-EBIstructural molecule activity  protein binding  extracellular space  cytosol  intermediate filament  aging  keratinization  hair cycle  extracellular exosome  cornification  
NDEx NetworkKRT33B
Atlas of Cancer Signalling NetworkKRT33B
Wikipedia pathwaysKRT33B
Orthology - Evolution
OrthoDB3884
GeneTree (enSembl)ENSG00000131738
Phylogenetic Trees/Animal Genes : TreeFamKRT33B
HOVERGENQ14525
HOGENOMQ14525
Homologs : HomoloGeneKRT33B
Homology/Alignments : Family Browser (UCSC)KRT33B
Gene fusions - Rearrangements
Fusion: Tumor Portal KRT33B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT33B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT33B
dbVarKRT33B
ClinVarKRT33B
1000_GenomesKRT33B 
Exome Variant ServerKRT33B
ExAC (Exome Aggregation Consortium)ENSG00000131738
GNOMAD BrowserENSG00000131738
Genetic variants : HAPMAP3884
Genomic Variants (DGV)KRT33B [DGVbeta]
DECIPHERKRT33B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT33B 
Mutations
ICGC Data PortalKRT33B 
TCGA Data PortalKRT33B 
Broad Tumor PortalKRT33B
OASIS PortalKRT33B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT33B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT33B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT33B
DgiDB (Drug Gene Interaction Database)KRT33B
DoCM (Curated mutations)KRT33B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT33B (select a term)
intoGenKRT33B
Cancer3DKRT33B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602762   
Orphanet
MedgenKRT33B
Genetic Testing Registry KRT33B
NextProtQ14525 [Medical]
TSGene3884
GENETestsKRT33B
Target ValidationKRT33B
Huge Navigator KRT33B [HugePedia]
snp3D : Map Gene to Disease3884
BioCentury BCIQKRT33B
ClinGenKRT33B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3884
Chemical/Pharm GKB GenePA30240
Clinical trialKRT33B
Miscellaneous
canSAR (ICR)KRT33B (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT33B
EVEXKRT33B
GoPubMedKRT33B
iHOPKRT33B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:52 CET 2017

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