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KRT34 (keratin 34)

Identity

Alias_namesKRTHA4
keratin, hair, acidic, 4
keratin 34, type I
Alias_symbol (synonym)Ha-4
Other aliasHA4
hHa4
HGNC (Hugo) KRT34
LocusID (NCBI) 3885
Atlas_Id 46145
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39533921 and ends at 39538636 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT34   6452
Cards
Entrez_Gene (NCBI)KRT34  3885  keratin 34
AliasesHA4; Ha-4; KRTHA4; hHa4
GeneCards (Weizmann)KRT34
Ensembl hg19 (Hinxton)ENSG00000131737 [Gene_View]  chr17:39533921-39538636 [Contig_View]  KRT34 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131737 [Gene_View]  chr17:39533921-39538636 [Contig_View]  KRT34 [Vega]
ICGC DataPortalENSG00000131737
TCGA cBioPortalKRT34
AceView (NCBI)KRT34
Genatlas (Paris)KRT34
WikiGenes3885
SOURCE (Princeton)KRT34
Genetics Home Reference (NIH)KRT34
Genomic and cartography
GoldenPath hg19 (UCSC)KRT34  -     chr17:39533921-39538636 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT34  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT34 - 17q21.2 [CytoView hg19]  KRT34 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT34 [Mapview hg19]  KRT34 [Mapview hg38]
OMIM602763   
Gene and transcription
Genbank (Entrez)BC033252 BC041070
RefSeq transcript (Entrez)NM_021013
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_012291 NT_010783 NW_003315953 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT34
Cluster EST : UnigeneHs.296942 [ NCBI ]
CGAP (NCI)Hs.296942
Alternative Splicing GalleryENSG00000131737
Gene ExpressionKRT34 [ NCBI-GEO ]   KRT34 [ EBI - ARRAY_EXPRESS ]   KRT34 [ SEEK ]   KRT34 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3885
GTEX Portal (Tissue expression)KRT34
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76011   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76011  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76011
Splice isoforms : SwissVarO76011
PhosPhoSitePlusO76011
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)KRT34
DMDM Disease mutations3885
Blocks (Seattle)KRT34
SuperfamilyO76011
Human Protein AtlasENSG00000131737
Peptide AtlasO76011
HPRD04137
IPIIPI00796822   
Protein Interaction databases
DIP (DOE-UCLA)O76011
IntAct (EBI)O76011
FunCoupENSG00000131737
BioGRIDKRT34
STRING (EMBL)KRT34
ZODIACKRT34
Ontologies - Pathways
QuickGOO76011
Ontology : AmiGOstructural molecule activity  extracellular space  intermediate filament  epidermis development  extracellular exosome  
Ontology : EGO-EBIstructural molecule activity  extracellular space  intermediate filament  epidermis development  extracellular exosome  
NDEx NetworkKRT34
Atlas of Cancer Signalling NetworkKRT34
Wikipedia pathwaysKRT34
Orthology - Evolution
OrthoDB3885
GeneTree (enSembl)ENSG00000131737
Phylogenetic Trees/Animal Genes : TreeFamKRT34
HOVERGENO76011
HOGENOMO76011
Homologs : HomoloGeneKRT34
Homology/Alignments : Family Browser (UCSC)KRT34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT34
dbVarKRT34
ClinVarKRT34
1000_GenomesKRT34 
Exome Variant ServerKRT34
ExAC (Exome Aggregation Consortium)KRT34 (select the gene name)
Genetic variants : HAPMAP3885
Genomic Variants (DGV)KRT34 [DGVbeta]
DECIPHER (Syndromes)17:39533921-39538636  ENSG00000131737
CONAN: Copy Number AnalysisKRT34 
Mutations
ICGC Data PortalKRT34 
TCGA Data PortalKRT34 
Broad Tumor PortalKRT34
OASIS PortalKRT34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT34
DgiDB (Drug Gene Interaction Database)KRT34
DoCM (Curated mutations)KRT34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT34 (select a term)
intoGenKRT34
Cancer3DKRT34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602763   
Orphanet
MedgenKRT34
Genetic Testing Registry KRT34
NextProtO76011 [Medical]
TSGene3885
GENETestsKRT34
Huge Navigator KRT34 [HugePedia]
snp3D : Map Gene to Disease3885
BioCentury BCIQKRT34
ClinGenKRT34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3885
Chemical/Pharm GKB GenePA30241
Clinical trialKRT34
Miscellaneous
canSAR (ICR)KRT34 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT34
EVEXKRT34
GoPubMedKRT34
iHOPKRT34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:06:33 CEST 2017

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