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KRT35 (keratin 35)

Identity

Alias_namesKRTHA5
keratin, hair, acidic, 5
keratin 35, type I
Alias_symbol (synonym)Ha-5
Other aliasHA5
hHa5
HGNC (Hugo) KRT35
LocusID (NCBI) 3886
Atlas_Id 65027
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41476689 and ends at 41481140 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT35   6453
Cards
Entrez_Gene (NCBI)KRT35  3886  keratin 35
AliasesHA5; Ha-5; KRTHA5; hHa5
GeneCards (Weizmann)KRT35
Ensembl hg19 (Hinxton)ENSG00000197079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197079 [Gene_View]  chr17:41476689-41481140 [Contig_View]  KRT35 [Vega]
ICGC DataPortalENSG00000197079
TCGA cBioPortalKRT35
AceView (NCBI)KRT35
Genatlas (Paris)KRT35
WikiGenes3886
SOURCE (Princeton)KRT35
Genetics Home Reference (NIH)KRT35
Genomic and cartography
GoldenPath hg38 (UCSC)KRT35  -     chr17:41476689-41481140 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT35  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT35 - 17q21.2 [CytoView hg19]  KRT35 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT35 [Mapview hg19]  KRT35 [Mapview hg38]
OMIM602764   
Gene and transcription
Genbank (Entrez)BC140365 BC146508 X90763
RefSeq transcript (Entrez)NM_002280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT35
Cluster EST : UnigeneHs.73082 [ NCBI ]
CGAP (NCI)Hs.73082
Alternative Splicing GalleryENSG00000197079
Gene ExpressionKRT35 [ NCBI-GEO ]   KRT35 [ EBI - ARRAY_EXPRESS ]   KRT35 [ SEEK ]   KRT35 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3886
GTEX Portal (Tissue expression)KRT35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92764   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92764  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92764
Splice isoforms : SwissVarQ92764
PhosPhoSitePlusQ92764
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I    Prefoldin   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT35
DMDM Disease mutations3886
Blocks (Seattle)KRT35
SuperfamilyQ92764
Human Protein AtlasENSG00000197079
Peptide AtlasQ92764
HPRD04138
IPIIPI00790172   
Protein Interaction databases
DIP (DOE-UCLA)Q92764
IntAct (EBI)Q92764
FunCoupENSG00000197079
BioGRIDKRT35
STRING (EMBL)KRT35
ZODIACKRT35
Ontologies - Pathways
QuickGOQ92764
Ontology : AmiGOstructural molecule activity  extracellular space  cytosol  intermediate filament  anatomical structure morphogenesis  keratinization  extracellular exosome  cornification  
Ontology : EGO-EBIstructural molecule activity  extracellular space  cytosol  intermediate filament  anatomical structure morphogenesis  keratinization  extracellular exosome  cornification  
NDEx NetworkKRT35
Atlas of Cancer Signalling NetworkKRT35
Wikipedia pathwaysKRT35
Orthology - Evolution
OrthoDB3886
GeneTree (enSembl)ENSG00000197079
Phylogenetic Trees/Animal Genes : TreeFamKRT35
HOVERGENQ92764
HOGENOMQ92764
Homologs : HomoloGeneKRT35
Homology/Alignments : Family Browser (UCSC)KRT35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT35
dbVarKRT35
ClinVarKRT35
1000_GenomesKRT35 
Exome Variant ServerKRT35
ExAC (Exome Aggregation Consortium)KRT35 (select the gene name)
Genetic variants : HAPMAP3886
Genomic Variants (DGV)KRT35 [DGVbeta]
DECIPHERKRT35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT35 
Mutations
ICGC Data PortalKRT35 
TCGA Data PortalKRT35 
Broad Tumor PortalKRT35
OASIS PortalKRT35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT35
DgiDB (Drug Gene Interaction Database)KRT35
DoCM (Curated mutations)KRT35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT35 (select a term)
intoGenKRT35
Cancer3DKRT35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602764   
Orphanet
MedgenKRT35
Genetic Testing Registry KRT35
NextProtQ92764 [Medical]
TSGene3886
GENETestsKRT35
Target ValidationKRT35
Huge Navigator KRT35 [HugePedia]
snp3D : Map Gene to Disease3886
BioCentury BCIQKRT35
ClinGenKRT35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3886
Chemical/Pharm GKB GenePA30242
Clinical trialKRT35
Miscellaneous
canSAR (ICR)KRT35 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT35
EVEXKRT35
GoPubMedKRT35
iHOPKRT35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:09 CEST 2017

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