Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT36 (keratin 36)

Identity

Alias_namesKRTHA6
keratin, hair, acidic, 6
keratin 36, type I
Other aliasHA6
hHa6
HGNC (Hugo) KRT36
LocusID (NCBI) 8689
Atlas_Id 65028
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41486136 and ends at 41489864 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT36   6454
Cards
Entrez_Gene (NCBI)KRT36  8689  keratin 36
AliasesHA6; KRTHA6; hHa6
GeneCards (Weizmann)KRT36
Ensembl hg19 (Hinxton)ENSG00000126337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126337 [Gene_View]  chr17:41486136-41489864 [Contig_View]  KRT36 [Vega]
ICGC DataPortalENSG00000126337
TCGA cBioPortalKRT36
AceView (NCBI)KRT36
Genatlas (Paris)KRT36
WikiGenes8689
SOURCE (Princeton)KRT36
Genetics Home Reference (NIH)KRT36
Genomic and cartography
GoldenPath hg38 (UCSC)KRT36  -     chr17:41486136-41489864 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT36  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT36 - 17q21.2 [CytoView hg19]  KRT36 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT36 [Mapview hg19]  KRT36 [Mapview hg38]
OMIM604540   
Gene and transcription
Genbank (Entrez)BC043581
RefSeq transcript (Entrez)NM_003771
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT36
Cluster EST : UnigeneHs.248189 [ NCBI ]
CGAP (NCI)Hs.248189
Alternative Splicing GalleryENSG00000126337
Gene ExpressionKRT36 [ NCBI-GEO ]   KRT36 [ EBI - ARRAY_EXPRESS ]   KRT36 [ SEEK ]   KRT36 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8689
GTEX Portal (Tissue expression)KRT36
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76013   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76013  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76013
Splice isoforms : SwissVarO76013
PhosPhoSitePlusO76013
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I    Prefoldin   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT36
DMDM Disease mutations8689
Blocks (Seattle)KRT36
SuperfamilyO76013
Human Protein AtlasENSG00000126337
Peptide AtlasO76013
HPRD05174
IPIIPI00008692   IPI00795958   
Protein Interaction databases
DIP (DOE-UCLA)O76013
IntAct (EBI)O76013
FunCoupENSG00000126337
BioGRIDKRT36
STRING (EMBL)KRT36
ZODIACKRT36
Ontologies - Pathways
QuickGOO76013
Ontology : AmiGOcytosol  intermediate filament  biological_process  structural constituent of epidermis  keratinization  regulation of keratinocyte differentiation  extracellular exosome  cornification  
Ontology : EGO-EBIcytosol  intermediate filament  biological_process  structural constituent of epidermis  keratinization  regulation of keratinocyte differentiation  extracellular exosome  cornification  
NDEx NetworkKRT36
Atlas of Cancer Signalling NetworkKRT36
Wikipedia pathwaysKRT36
Orthology - Evolution
OrthoDB8689
GeneTree (enSembl)ENSG00000126337
Phylogenetic Trees/Animal Genes : TreeFamKRT36
HOVERGENO76013
HOGENOMO76013
Homologs : HomoloGeneKRT36
Homology/Alignments : Family Browser (UCSC)KRT36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT36
dbVarKRT36
ClinVarKRT36
1000_GenomesKRT36 
Exome Variant ServerKRT36
ExAC (Exome Aggregation Consortium)KRT36 (select the gene name)
Genetic variants : HAPMAP8689
Genomic Variants (DGV)KRT36 [DGVbeta]
DECIPHERKRT36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT36 
Mutations
ICGC Data PortalKRT36 
TCGA Data PortalKRT36 
Broad Tumor PortalKRT36
OASIS PortalKRT36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT36
DgiDB (Drug Gene Interaction Database)KRT36
DoCM (Curated mutations)KRT36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT36 (select a term)
intoGenKRT36
Cancer3DKRT36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604540   
Orphanet
MedgenKRT36
Genetic Testing Registry KRT36
NextProtO76013 [Medical]
TSGene8689
GENETestsKRT36
Target ValidationKRT36
Huge Navigator KRT36 [HugePedia]
snp3D : Map Gene to Disease8689
BioCentury BCIQKRT36
ClinGenKRT36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8689
Chemical/Pharm GKB GenePA30243
Clinical trialKRT36
Miscellaneous
canSAR (ICR)KRT36 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT36
EVEXKRT36
GoPubMedKRT36
iHOPKRT36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:54:59 CEST 2017

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