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KRT38 (keratin 38)

Identity

Alias_namesKRTHA8
keratin, hair, acidic, 8
keratin 38, type I
Other aliasHA8
hHa8
HGNC (Hugo) KRT38
LocusID (NCBI) 8687
Atlas_Id 65030
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41436369 and ends at 41441344 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT38   6456
Cards
Entrez_Gene (NCBI)KRT38  8687  keratin 38
AliasesHA8; KRTHA8; hHa8
GeneCards (Weizmann)KRT38
Ensembl hg19 (Hinxton)ENSG00000171360 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171360 [Gene_View]  chr17:41436369-41441344 [Contig_View]  KRT38 [Vega]
ICGC DataPortalENSG00000171360
TCGA cBioPortalKRT38
AceView (NCBI)KRT38
Genatlas (Paris)KRT38
WikiGenes8687
SOURCE (Princeton)KRT38
Genetics Home Reference (NIH)KRT38
Genomic and cartography
GoldenPath hg38 (UCSC)KRT38  -     chr17:41436369-41441344 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT38  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT38 - 17q21.2 [CytoView hg19]  KRT38 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT38 [Mapview hg19]  KRT38 [Mapview hg38]
OMIM604542   
Gene and transcription
Genbank (Entrez)AJ786656 BC131715
RefSeq transcript (Entrez)NM_006771
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT38
Cluster EST : UnigeneHs.248188 [ NCBI ]
CGAP (NCI)Hs.248188
Alternative Splicing GalleryENSG00000171360
Gene ExpressionKRT38 [ NCBI-GEO ]   KRT38 [ EBI - ARRAY_EXPRESS ]   KRT38 [ SEEK ]   KRT38 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8687
GTEX Portal (Tissue expression)KRT38
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76015   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76015  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76015
Splice isoforms : SwissVarO76015
PhosPhoSitePlusO76015
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT38
DMDM Disease mutations8687
Blocks (Seattle)KRT38
SuperfamilyO76015
Human Protein AtlasENSG00000171360
Peptide AtlasO76015
HPRD05176
IPIIPI00297641   
Protein Interaction databases
DIP (DOE-UCLA)O76015
IntAct (EBI)O76015
FunCoupENSG00000171360
BioGRIDKRT38
STRING (EMBL)KRT38
ZODIACKRT38
Ontologies - Pathways
QuickGOO76015
Ontology : AmiGOstructural molecule activity  protein binding  cytosol  intermediate filament  keratinization  extracellular exosome  cornification  
Ontology : EGO-EBIstructural molecule activity  protein binding  cytosol  intermediate filament  keratinization  extracellular exosome  cornification  
NDEx NetworkKRT38
Atlas of Cancer Signalling NetworkKRT38
Wikipedia pathwaysKRT38
Orthology - Evolution
OrthoDB8687
GeneTree (enSembl)ENSG00000171360
Phylogenetic Trees/Animal Genes : TreeFamKRT38
HOVERGENO76015
HOGENOMO76015
Homologs : HomoloGeneKRT38
Homology/Alignments : Family Browser (UCSC)KRT38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT38
dbVarKRT38
ClinVarKRT38
1000_GenomesKRT38 
Exome Variant ServerKRT38
ExAC (Exome Aggregation Consortium)KRT38 (select the gene name)
Genetic variants : HAPMAP8687
Genomic Variants (DGV)KRT38 [DGVbeta]
DECIPHERKRT38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT38 
Mutations
ICGC Data PortalKRT38 
TCGA Data PortalKRT38 
Broad Tumor PortalKRT38
OASIS PortalKRT38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT38
DgiDB (Drug Gene Interaction Database)KRT38
DoCM (Curated mutations)KRT38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT38 (select a term)
intoGenKRT38
Cancer3DKRT38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604542   
Orphanet
MedgenKRT38
Genetic Testing Registry KRT38
NextProtO76015 [Medical]
TSGene8687
GENETestsKRT38
Target ValidationKRT38
Huge Navigator KRT38 [HugePedia]
snp3D : Map Gene to Disease8687
BioCentury BCIQKRT38
ClinGenKRT38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8687
Chemical/Pharm GKB GenePA30245
Clinical trialKRT38
Miscellaneous
canSAR (ICR)KRT38 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT38
EVEXKRT38
GoPubMedKRT38
iHOPKRT38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:10 CEST 2017

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