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KRT39 (keratin 39)

Identity

Alias_nameskeratin 39, type I
Alias_symbol (synonym)KA35
Other aliasCK-39
K39
HGNC (Hugo) KRT39
LocusID (NCBI) 390792
Atlas_Id 65031
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 40958417 and ends at 40966892 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT39   32971
Cards
Entrez_Gene (NCBI)KRT39  390792  keratin 39
AliasesCK-39; K39; KA35
GeneCards (Weizmann)KRT39
Ensembl hg19 (Hinxton)ENSG00000196859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196859 [Gene_View]  chr17:40958417-40966892 [Contig_View]  KRT39 [Vega]
ICGC DataPortalENSG00000196859
TCGA cBioPortalKRT39
AceView (NCBI)KRT39
Genatlas (Paris)KRT39
WikiGenes390792
SOURCE (Princeton)KRT39
Genetics Home Reference (NIH)KRT39
Genomic and cartography
GoldenPath hg38 (UCSC)KRT39  -     chr17:40958417-40966892 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT39  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRT39 - 17q21.2 [CytoView hg19]  KRT39 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT39 [Mapview hg19]  KRT39 [Mapview hg38]
OMIM616678   
Gene and transcription
Genbank (Entrez)AJ786657 BC157887 BC160073 BC171907 BK004054
RefSeq transcript (Entrez)NM_213656
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT39
Cluster EST : UnigeneHs.28467 [ NCBI ]
CGAP (NCI)Hs.28467
Alternative Splicing GalleryENSG00000196859
Gene ExpressionKRT39 [ NCBI-GEO ]   KRT39 [ EBI - ARRAY_EXPRESS ]   KRT39 [ SEEK ]   KRT39 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390792
GTEX Portal (Tissue expression)KRT39
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6A163   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6A163  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6A163
Splice isoforms : SwissVarQ6A163
PhosPhoSitePlusQ6A163
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT39
DMDM Disease mutations390792
Blocks (Seattle)KRT39
SuperfamilyQ6A163
Human Protein AtlasENSG00000196859
Peptide AtlasQ6A163
HPRD13750
IPIIPI00741855   
Protein Interaction databases
DIP (DOE-UCLA)Q6A163
IntAct (EBI)Q6A163
FunCoupENSG00000196859
BioGRIDKRT39
STRING (EMBL)KRT39
ZODIACKRT39
Ontologies - Pathways
QuickGOQ6A163
Ontology : AmiGOstructural molecule activity  cytosol  intermediate filament  keratinization  cornification  
Ontology : EGO-EBIstructural molecule activity  cytosol  intermediate filament  keratinization  cornification  
NDEx NetworkKRT39
Atlas of Cancer Signalling NetworkKRT39
Wikipedia pathwaysKRT39
Orthology - Evolution
OrthoDB390792
GeneTree (enSembl)ENSG00000196859
Phylogenetic Trees/Animal Genes : TreeFamKRT39
HOVERGENQ6A163
HOGENOMQ6A163
Homologs : HomoloGeneKRT39
Homology/Alignments : Family Browser (UCSC)KRT39
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT39
dbVarKRT39
ClinVarKRT39
1000_GenomesKRT39 
Exome Variant ServerKRT39
ExAC (Exome Aggregation Consortium)KRT39 (select the gene name)
Genetic variants : HAPMAP390792
Genomic Variants (DGV)KRT39 [DGVbeta]
DECIPHERKRT39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT39 
Mutations
ICGC Data PortalKRT39 
TCGA Data PortalKRT39 
Broad Tumor PortalKRT39
OASIS PortalKRT39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT39
DgiDB (Drug Gene Interaction Database)KRT39
DoCM (Curated mutations)KRT39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT39 (select a term)
intoGenKRT39
Cancer3DKRT39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616678   
Orphanet
MedgenKRT39
Genetic Testing Registry KRT39
NextProtQ6A163 [Medical]
TSGene390792
GENETestsKRT39
Target ValidationKRT39
Huge Navigator KRT39 [HugePedia]
snp3D : Map Gene to Disease390792
BioCentury BCIQKRT39
ClinGenKRT39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390792
Chemical/Pharm GKB GenePA147357633
Clinical trialKRT39
Miscellaneous
canSAR (ICR)KRT39 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT39
EVEXKRT39
GoPubMedKRT39
iHOPKRT39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:00 CEST 2017

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