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KRT40 (keratin 40, type I)

Identity

Alias_nameskeratin 40, type I
Alias_symbol (synonym)FLJ36600
KA36
Other aliasCK-40
K40
HGNC (Hugo) KRT40
LocusID (NCBI) 125115
Atlas_Id 65032
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39133968 and ends at 39143387 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CACNB1 (17q12) / KRT40 (17q21.2)MED24 (17q21.1) / KRT40 (17q21.2)CACNB1 KRT40
MED24 KRT40

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT40   26707
Cards
Entrez_Gene (NCBI)KRT40  125115  keratin 40, type I
AliasesCK-40; K40; KA36
GeneCards (Weizmann)KRT40
Ensembl hg19 (Hinxton)ENSG00000204889 [Gene_View]  chr17:39133968-39143387 [Contig_View]  KRT40 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204889 [Gene_View]  chr17:39133968-39143387 [Contig_View]  KRT40 [Vega]
ICGC DataPortalENSG00000204889
TCGA cBioPortalKRT40
AceView (NCBI)KRT40
Genatlas (Paris)KRT40
WikiGenes125115
SOURCE (Princeton)KRT40
Genetics Home Reference (NIH)KRT40
Genomic and cartography
GoldenPath hg19 (UCSC)KRT40  -     chr17:39133968-39143387 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT40  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT40 - 17q21.2 [CytoView hg19]  KRT40 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT40 [Mapview hg19]  KRT40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ786658 AK093919 BC130396 BC144250 BC150174
RefSeq transcript (Entrez)NM_182497
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_012412 NT_010783 NW_003871091 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT40
Cluster EST : UnigeneHs.534929 [ NCBI ]
CGAP (NCI)Hs.534929
Alternative Splicing GalleryENSG00000204889
Gene ExpressionKRT40 [ NCBI-GEO ]   KRT40 [ EBI - ARRAY_EXPRESS ]   KRT40 [ SEEK ]   KRT40 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125115
GTEX Portal (Tissue expression)KRT40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6A162   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6A162  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6A162
Splice isoforms : SwissVarQ6A162
PhosPhoSitePlusQ6A162
Domains : Interpro (EBI)IF    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)KRT40
DMDM Disease mutations125115
Blocks (Seattle)KRT40
SuperfamilyQ6A162
Human Protein AtlasENSG00000204889
Peptide AtlasQ6A162
HPRD08304
IPIIPI00552959   IPI00847964   
Protein Interaction databases
DIP (DOE-UCLA)Q6A162
IntAct (EBI)Q6A162
FunCoupENSG00000204889
BioGRIDKRT40
STRING (EMBL)KRT40
ZODIACKRT40
Ontologies - Pathways
QuickGOQ6A162
Ontology : AmiGOstructural molecule activity  protein binding  intermediate filament  
Ontology : EGO-EBIstructural molecule activity  protein binding  intermediate filament  
NDEx NetworkKRT40
Atlas of Cancer Signalling NetworkKRT40
Wikipedia pathwaysKRT40
Orthology - Evolution
OrthoDB125115
GeneTree (enSembl)ENSG00000204889
Phylogenetic Trees/Animal Genes : TreeFamKRT40
HOVERGENQ6A162
HOGENOMQ6A162
Homologs : HomoloGeneKRT40
Homology/Alignments : Family Browser (UCSC)KRT40
Gene fusions - Rearrangements
Fusion: TCGACACNB1 KRT40
Fusion: TCGAMED24 KRT40
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT40
dbVarKRT40
ClinVarKRT40
1000_GenomesKRT40 
Exome Variant ServerKRT40
ExAC (Exome Aggregation Consortium)KRT40 (select the gene name)
Genetic variants : HAPMAP125115
Genomic Variants (DGV)KRT40 [DGVbeta]
DECIPHER (Syndromes)17:39133968-39143387  ENSG00000204889
CONAN: Copy Number AnalysisKRT40 
Mutations
ICGC Data PortalKRT40 
TCGA Data PortalKRT40 
Broad Tumor PortalKRT40
OASIS PortalKRT40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT40
DgiDB (Drug Gene Interaction Database)KRT40
DoCM (Curated mutations)KRT40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT40 (select a term)
intoGenKRT40
Cancer3DKRT40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRT40
Genetic Testing Registry KRT40
NextProtQ6A162 [Medical]
TSGene125115
GENETestsKRT40
Huge Navigator KRT40 [HugePedia]
snp3D : Map Gene to Disease125115
BioCentury BCIQKRT40
ClinGenKRT40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125115
Chemical/Pharm GKB GenePA147357651
Clinical trialKRT40
Miscellaneous
canSAR (ICR)KRT40 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT40
EVEXKRT40
GoPubMedKRT40
iHOPKRT40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:15 CET 2017

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