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KRT71 (keratin 71)

Identity

Alias_nameskeratin 71, type II
Alias_symbol (synonym)KRT6IRS
KRT6IRS1
K6IRS1
Other aliasHYPT13
HGNC (Hugo) KRT71
LocusID (NCBI) 112802
Atlas_Id 65036
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52543909 and ends at 52553147 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT71   28927
Cards
Entrez_Gene (NCBI)KRT71  112802  keratin 71
AliasesHYPT13; K6IRS1; KRT6IRS; KRT6IRS1
GeneCards (Weizmann)KRT71
Ensembl hg19 (Hinxton)ENSG00000139648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139648 [Gene_View]  chr12:52543909-52553147 [Contig_View]  KRT71 [Vega]
ICGC DataPortalENSG00000139648
TCGA cBioPortalKRT71
AceView (NCBI)KRT71
Genatlas (Paris)KRT71
WikiGenes112802
SOURCE (Princeton)KRT71
Genetics Home Reference (NIH)KRT71
Genomic and cartography
GoldenPath hg38 (UCSC)KRT71  -     chr12:52543909-52553147 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT71  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT71 - 12q13.13 [CytoView hg19]  KRT71 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT71 [Mapview hg19]  KRT71 [Mapview hg38]
OMIM608245   615896   
Gene and transcription
Genbank (Entrez)AJ308599 AJ308600 AJ308601 AK122795 BC103917
RefSeq transcript (Entrez)NM_033448
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT71
Cluster EST : UnigeneHs.660007 [ NCBI ]
CGAP (NCI)Hs.660007
Alternative Splicing GalleryENSG00000139648
Gene ExpressionKRT71 [ NCBI-GEO ]   KRT71 [ EBI - ARRAY_EXPRESS ]   KRT71 [ SEEK ]   KRT71 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112802
GTEX Portal (Tissue expression)KRT71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SY84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SY84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SY84
Splice isoforms : SwissVarQ3SY84
PhosPhoSitePlusQ3SY84
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_2_head    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)    Keratin_2_head (PF16208)   
Domain families : Pfam (NCBI)pfam00038    pfam16208   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT71
DMDM Disease mutations112802
Blocks (Seattle)KRT71
SuperfamilyQ3SY84
Human Protein AtlasENSG00000139648
Peptide AtlasQ3SY84
HPRD09745
IPIIPI00061200   
Protein Interaction databases
DIP (DOE-UCLA)Q3SY84
IntAct (EBI)Q3SY84
FunCoupENSG00000139648
BioGRIDKRT71
STRING (EMBL)KRT71
ZODIACKRT71
Ontologies - Pathways
QuickGOQ3SY84
Ontology : AmiGOstructural molecule activity  protein binding  cytosol  hair follicle morphogenesis  keratinization  keratin filament  intermediate filament organization  extracellular exosome  cornification  
Ontology : EGO-EBIstructural molecule activity  protein binding  cytosol  hair follicle morphogenesis  keratinization  keratin filament  intermediate filament organization  extracellular exosome  cornification  
NDEx NetworkKRT71
Atlas of Cancer Signalling NetworkKRT71
Wikipedia pathwaysKRT71
Orthology - Evolution
OrthoDB112802
GeneTree (enSembl)ENSG00000139648
Phylogenetic Trees/Animal Genes : TreeFamKRT71
HOVERGENQ3SY84
HOGENOMQ3SY84
Homologs : HomoloGeneKRT71
Homology/Alignments : Family Browser (UCSC)KRT71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT71
dbVarKRT71
ClinVarKRT71
1000_GenomesKRT71 
Exome Variant ServerKRT71
ExAC (Exome Aggregation Consortium)KRT71 (select the gene name)
Genetic variants : HAPMAP112802
Genomic Variants (DGV)KRT71 [DGVbeta]
DECIPHERKRT71 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT71 
Mutations
ICGC Data PortalKRT71 
TCGA Data PortalKRT71 
Broad Tumor PortalKRT71
OASIS PortalKRT71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT71
DgiDB (Drug Gene Interaction Database)KRT71
DoCM (Curated mutations)KRT71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT71 (select a term)
intoGenKRT71
Cancer3DKRT71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608245    615896   
Orphanet8571   
MedgenKRT71
Genetic Testing Registry KRT71
NextProtQ3SY84 [Medical]
TSGene112802
GENETestsKRT71
Target ValidationKRT71
Huge Navigator KRT71 [HugePedia]
snp3D : Map Gene to Disease112802
BioCentury BCIQKRT71
ClinGenKRT71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112802
Chemical/Pharm GKB GenePA147357697
Clinical trialKRT71
Miscellaneous
canSAR (ICR)KRT71 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT71
EVEXKRT71
GoPubMedKRT71
iHOPKRT71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:11 CEST 2017

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