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KRT72 (keratin 72)

Identity

Alias_nameskeratin 72
Alias_symbol (synonym)K6IRS2
KRT6IRS2
KRT6
K6irs
Other alias
HGNC (Hugo) KRT72
LocusID (NCBI) 140807
Atlas_Id 52782
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52585589 and ends at 52601538 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT72   28932
Cards
Entrez_Gene (NCBI)KRT72  140807  keratin 72
AliasesK6IRS2; K6irs; KRT6; KRT6IRS2
GeneCards (Weizmann)KRT72
Ensembl hg19 (Hinxton)ENSG00000170486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170486 [Gene_View]  chr12:52585589-52601538 [Contig_View]  KRT72 [Vega]
ICGC DataPortalENSG00000170486
TCGA cBioPortalKRT72
AceView (NCBI)KRT72
Genatlas (Paris)KRT72
WikiGenes140807
SOURCE (Princeton)KRT72
Genetics Home Reference (NIH)KRT72
Genomic and cartography
GoldenPath hg38 (UCSC)KRT72  -     chr12:52585589-52601538 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT72  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT72 - 12q13.13 [CytoView hg19]  KRT72 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT72 [Mapview hg19]  KRT72 [Mapview hg38]
OMIM608246   
Gene and transcription
Genbank (Entrez)AK093060 AK293645 AK302016 AY033495 BC113686
RefSeq transcript (Entrez)NM_001146225 NM_001146226 NM_080747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT72
Cluster EST : UnigeneHs.662013 [ NCBI ]
CGAP (NCI)Hs.662013
Alternative Splicing GalleryENSG00000170486
Gene ExpressionKRT72 [ NCBI-GEO ]   KRT72 [ EBI - ARRAY_EXPRESS ]   KRT72 [ SEEK ]   KRT72 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140807
GTEX Portal (Tissue expression)KRT72
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CN4
Splice isoforms : SwissVarQ14CN4
PhosPhoSitePlusQ14CN4
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_2_head    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)    Keratin_2_head (PF16208)   
Domain families : Pfam (NCBI)pfam00038    pfam16208   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT72
DMDM Disease mutations140807
Blocks (Seattle)KRT72
SuperfamilyQ14CN4
Human Protein AtlasENSG00000170486
Peptide AtlasQ14CN4
HPRD09746
IPIIPI00103481   IPI00794272   IPI00793641   IPI01021890   IPI01022028   IPI00910219   
Protein Interaction databases
DIP (DOE-UCLA)Q14CN4
IntAct (EBI)Q14CN4
FunCoupENSG00000170486
BioGRIDKRT72
STRING (EMBL)KRT72
ZODIACKRT72
Ontologies - Pathways
QuickGOQ14CN4
Ontology : AmiGOmolecular_function  structural molecule activity  protein binding  cytosol  biological_process  keratinization  keratin filament  extracellular exosome  cornification  
Ontology : EGO-EBImolecular_function  structural molecule activity  protein binding  cytosol  biological_process  keratinization  keratin filament  extracellular exosome  cornification  
NDEx NetworkKRT72
Atlas of Cancer Signalling NetworkKRT72
Wikipedia pathwaysKRT72
Orthology - Evolution
OrthoDB140807
GeneTree (enSembl)ENSG00000170486
Phylogenetic Trees/Animal Genes : TreeFamKRT72
HOVERGENQ14CN4
HOGENOMQ14CN4
Homologs : HomoloGeneKRT72
Homology/Alignments : Family Browser (UCSC)KRT72
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT72
dbVarKRT72
ClinVarKRT72
1000_GenomesKRT72 
Exome Variant ServerKRT72
ExAC (Exome Aggregation Consortium)KRT72 (select the gene name)
Genetic variants : HAPMAP140807
Genomic Variants (DGV)KRT72 [DGVbeta]
DECIPHERKRT72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT72 
Mutations
ICGC Data PortalKRT72 
TCGA Data PortalKRT72 
Broad Tumor PortalKRT72
OASIS PortalKRT72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT72
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT72
DgiDB (Drug Gene Interaction Database)KRT72
DoCM (Curated mutations)KRT72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT72 (select a term)
intoGenKRT72
Cancer3DKRT72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608246   
Orphanet
MedgenKRT72
Genetic Testing Registry KRT72
NextProtQ14CN4 [Medical]
TSGene140807
GENETestsKRT72
Target ValidationKRT72
Huge Navigator KRT72 [HugePedia]
snp3D : Map Gene to Disease140807
BioCentury BCIQKRT72
ClinGenKRT72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140807
Chemical/Pharm GKB GenePA147357719
Clinical trialKRT72
Miscellaneous
canSAR (ICR)KRT72 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT72
EVEXKRT72
GoPubMedKRT72
iHOPKRT72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:14:55 CEST 2017

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