Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRT77 (keratin 77, type II)

Identity

Alias_namesKRT1B
keratin 1B
keratin 77, type II
Other aliasK1B
HGNC (Hugo) KRT77
LocusID (NCBI) 374454
Atlas_Id 65041
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53083411 and ends at 53097247 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT77   20411
Cards
Entrez_Gene (NCBI)KRT77  374454  keratin 77, type II
AliasesK1B; KRT1B
GeneCards (Weizmann)KRT77
Ensembl hg19 (Hinxton)ENSG00000189182 [Gene_View]  chr12:53083411-53097247 [Contig_View]  KRT77 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189182 [Gene_View]  chr12:53083411-53097247 [Contig_View]  KRT77 [Vega]
ICGC DataPortalENSG00000189182
TCGA cBioPortalKRT77
AceView (NCBI)KRT77
Genatlas (Paris)KRT77
WikiGenes374454
SOURCE (Princeton)KRT77
Genetics Home Reference (NIH)KRT77
Genomic and cartography
GoldenPath hg19 (UCSC)KRT77  -     chr12:53083411-53097247 -  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT77  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblKRT77 - 12q13.13 [CytoView hg19]  KRT77 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT77 [Mapview hg19]  KRT77 [Mapview hg38]
OMIM611158   
Gene and transcription
Genbank (Entrez)AJ564104 BC033366 BC118598 BC122558
RefSeq transcript (Entrez)NM_175078
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_012322 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)KRT77
Cluster EST : UnigeneHs.334989 [ NCBI ]
CGAP (NCI)Hs.334989
Alternative Splicing GalleryENSG00000189182
Gene ExpressionKRT77 [ NCBI-GEO ]   KRT77 [ EBI - ARRAY_EXPRESS ]   KRT77 [ SEEK ]   KRT77 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT77 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374454
GTEX Portal (Tissue expression)KRT77
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z794   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z794  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z794
Splice isoforms : SwissVarQ7Z794
PhosPhoSitePlusQ7Z794
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_II    Spectrin/alpha-actinin   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)SPEC (SM00150)  
Conserved Domain (NCBI)KRT77
DMDM Disease mutations374454
Blocks (Seattle)KRT77
SuperfamilyQ7Z794
Human Protein AtlasENSG00000189182
Peptide AtlasQ7Z794
HPRD13934
IPIIPI00376379   IPI01012272   IPI01021999   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z794
IntAct (EBI)Q7Z794
FunCoupENSG00000189182
BioGRIDKRT77
STRING (EMBL)KRT77
ZODIACKRT77
Ontologies - Pathways
QuickGOQ7Z794
Ontology : AmiGOmolecular_function  structural molecule activity  cytoskeleton  biological_process  keratin filament  extracellular exosome  
Ontology : EGO-EBImolecular_function  structural molecule activity  cytoskeleton  biological_process  keratin filament  extracellular exosome  
NDEx NetworkKRT77
Atlas of Cancer Signalling NetworkKRT77
Wikipedia pathwaysKRT77
Orthology - Evolution
OrthoDB374454
GeneTree (enSembl)ENSG00000189182
Phylogenetic Trees/Animal Genes : TreeFamKRT77
HOVERGENQ7Z794
HOGENOMQ7Z794
Homologs : HomoloGeneKRT77
Homology/Alignments : Family Browser (UCSC)KRT77
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT77 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT77
dbVarKRT77
ClinVarKRT77
1000_GenomesKRT77 
Exome Variant ServerKRT77
ExAC (Exome Aggregation Consortium)KRT77 (select the gene name)
Genetic variants : HAPMAP374454
Genomic Variants (DGV)KRT77 [DGVbeta]
DECIPHER (Syndromes)12:53083411-53097247  ENSG00000189182
CONAN: Copy Number AnalysisKRT77 
Mutations
ICGC Data PortalKRT77 
TCGA Data PortalKRT77 
Broad Tumor PortalKRT77
OASIS PortalKRT77 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT77  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT77
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT77
DgiDB (Drug Gene Interaction Database)KRT77
DoCM (Curated mutations)KRT77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT77 (select a term)
intoGenKRT77
Cancer3DKRT77(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611158   
Orphanet
MedgenKRT77
Genetic Testing Registry KRT77
NextProtQ7Z794 [Medical]
TSGene374454
GENETestsKRT77
Huge Navigator KRT77 [HugePedia]
snp3D : Map Gene to Disease374454
BioCentury BCIQKRT77
ClinGenKRT77
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374454
Chemical/Pharm GKB GenePA134896049
Clinical trialKRT77
Miscellaneous
canSAR (ICR)KRT77 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT77
EVEXKRT77
GoPubMedKRT77
iHOPKRT77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:16 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.