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KRT78 (keratin 78, type II)

Identity

Alias_nameskeratin 78, type II
Alias_symbol (synonym)K5B
Other aliasCK-78
K78
Kb40
HGNC (Hugo) KRT78
LocusID (NCBI) 196374
Atlas_Id 65042
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53231588 and ends at 53242067 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NRG1 (8p12) / KRT78 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT78   28926
Cards
Entrez_Gene (NCBI)KRT78  196374  keratin 78, type II
AliasesCK-78; K5B; K78; Kb40
GeneCards (Weizmann)KRT78
Ensembl hg19 (Hinxton)ENSG00000170423 [Gene_View]  chr12:53231588-53242067 [Contig_View]  KRT78 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170423 [Gene_View]  chr12:53231588-53242067 [Contig_View]  KRT78 [Vega]
ICGC DataPortalENSG00000170423
TCGA cBioPortalKRT78
AceView (NCBI)KRT78
Genatlas (Paris)KRT78
WikiGenes196374
SOURCE (Princeton)KRT78
Genetics Home Reference (NIH)KRT78
Genomic and cartography
GoldenPath hg19 (UCSC)KRT78  -     chr12:53231588-53242067 -  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT78  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblKRT78 - 12q13.13 [CytoView hg19]  KRT78 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT78 [Mapview hg19]  KRT78 [Mapview hg38]
OMIM611159   
Gene and transcription
Genbank (Entrez)AI143912 AK096419 AK290901 AK298636 BC141554
RefSeq transcript (Entrez)NM_001300814 NM_173352
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_012297 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)KRT78
Cluster EST : UnigeneHs.665267 [ NCBI ]
CGAP (NCI)Hs.665267
Alternative Splicing GalleryENSG00000170423
Gene ExpressionKRT78 [ NCBI-GEO ]   KRT78 [ EBI - ARRAY_EXPRESS ]   KRT78 [ SEEK ]   KRT78 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196374
GTEX Portal (Tissue expression)KRT78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1N4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1N4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1N4
Splice isoforms : SwissVarQ8N1N4
PhosPhoSitePlusQ8N1N4
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)KRT78
DMDM Disease mutations196374
Blocks (Seattle)KRT78
SuperfamilyQ8N1N4
Human Protein AtlasENSG00000170423
Peptide AtlasQ8N1N4
HPRD17171
IPIIPI00477227   IPI00166205   IPI01011162   IPI01021047   IPI01021179   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1N4
IntAct (EBI)Q8N1N4
FunCoupENSG00000170423
BioGRIDKRT78
STRING (EMBL)KRT78
ZODIACKRT78
Ontologies - Pathways
QuickGOQ8N1N4
Ontology : AmiGOstructural molecule activity  extracellular space  keratin filament  extracellular exosome  
Ontology : EGO-EBIstructural molecule activity  extracellular space  keratin filament  extracellular exosome  
NDEx NetworkKRT78
Atlas of Cancer Signalling NetworkKRT78
Wikipedia pathwaysKRT78
Orthology - Evolution
OrthoDB196374
GeneTree (enSembl)ENSG00000170423
Phylogenetic Trees/Animal Genes : TreeFamKRT78
HOVERGENQ8N1N4
HOGENOMQ8N1N4
Homologs : HomoloGeneKRT78
Homology/Alignments : Family Browser (UCSC)KRT78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT78
dbVarKRT78
ClinVarKRT78
1000_GenomesKRT78 
Exome Variant ServerKRT78
ExAC (Exome Aggregation Consortium)KRT78 (select the gene name)
Genetic variants : HAPMAP196374
Genomic Variants (DGV)KRT78 [DGVbeta]
DECIPHER (Syndromes)12:53231588-53242067  ENSG00000170423
CONAN: Copy Number AnalysisKRT78 
Mutations
ICGC Data PortalKRT78 
TCGA Data PortalKRT78 
Broad Tumor PortalKRT78
OASIS PortalKRT78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT78
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT78
DgiDB (Drug Gene Interaction Database)KRT78
DoCM (Curated mutations)KRT78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT78 (select a term)
intoGenKRT78
Cancer3DKRT78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611159   
Orphanet
MedgenKRT78
Genetic Testing Registry KRT78
NextProtQ8N1N4 [Medical]
TSGene196374
GENETestsKRT78
Huge Navigator KRT78 [HugePedia]
snp3D : Map Gene to Disease196374
BioCentury BCIQKRT78
ClinGenKRT78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196374
Chemical/Pharm GKB GenePA147357807
Clinical trialKRT78
Miscellaneous
canSAR (ICR)KRT78 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT78
EVEXKRT78
GoPubMedKRT78
iHOPKRT78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:17 CET 2017

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