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KRT79 (keratin 79)

Identity

Alias_nameskeratin 79, type II
Alias_symbol (synonym)K6L
KRT6L
Other alias
HGNC (Hugo) KRT79
LocusID (NCBI) 338785
Atlas_Id 65043
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52821447 and ends at 52834293 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT79   28930
Cards
Entrez_Gene (NCBI)KRT79  338785  keratin 79
AliasesK6L; KRT6L
GeneCards (Weizmann)KRT79
Ensembl hg19 (Hinxton)ENSG00000185640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185640 [Gene_View]  chr12:52821447-52834293 [Contig_View]  KRT79 [Vega]
ICGC DataPortalENSG00000185640
TCGA cBioPortalKRT79
AceView (NCBI)KRT79
Genatlas (Paris)KRT79
WikiGenes338785
SOURCE (Princeton)KRT79
Genetics Home Reference (NIH)KRT79
Genomic and cartography
GoldenPath hg38 (UCSC)KRT79  -     chr12:52821447-52834293 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT79  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT79 - 12q13.13 [CytoView hg19]  KRT79 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT79 [Mapview hg19]  KRT79 [Mapview hg38]
OMIM611160   
Gene and transcription
Genbank (Entrez)AJ564105 AK130156 BC039148 BC063648
RefSeq transcript (Entrez)NM_175834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT79
Cluster EST : UnigeneHs.711471 [ NCBI ]
CGAP (NCI)Hs.711471
Alternative Splicing GalleryENSG00000185640
Gene ExpressionKRT79 [ NCBI-GEO ]   KRT79 [ EBI - ARRAY_EXPRESS ]   KRT79 [ SEEK ]   KRT79 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT79 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338785
GTEX Portal (Tissue expression)KRT79
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5XKE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5XKE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5XKE5
Splice isoforms : SwissVarQ5XKE5
PhosPhoSitePlusQ5XKE5
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_2_head    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)    Keratin_2_head (PF16208)   
Domain families : Pfam (NCBI)pfam00038    pfam16208   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT79
DMDM Disease mutations338785
Blocks (Seattle)KRT79
SuperfamilyQ5XKE5
Human Protein AtlasENSG00000185640
Peptide AtlasQ5XKE5
HPRD11183
IPIIPI00241841   IPI01020752   
Protein Interaction databases
DIP (DOE-UCLA)Q5XKE5
IntAct (EBI)Q5XKE5
FunCoupENSG00000185640
BioGRIDKRT79
STRING (EMBL)KRT79
ZODIACKRT79
Ontologies - Pathways
QuickGOQ5XKE5
Ontology : AmiGOstructural molecule activity  protein binding  cytosol  enzyme binding  keratinization  keratin filament  extracellular exosome  cornification  
Ontology : EGO-EBIstructural molecule activity  protein binding  cytosol  enzyme binding  keratinization  keratin filament  extracellular exosome  cornification  
NDEx NetworkKRT79
Atlas of Cancer Signalling NetworkKRT79
Wikipedia pathwaysKRT79
Orthology - Evolution
OrthoDB338785
GeneTree (enSembl)ENSG00000185640
Phylogenetic Trees/Animal Genes : TreeFamKRT79
HOVERGENQ5XKE5
HOGENOMQ5XKE5
Homologs : HomoloGeneKRT79
Homology/Alignments : Family Browser (UCSC)KRT79
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT79 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT79
dbVarKRT79
ClinVarKRT79
1000_GenomesKRT79 
Exome Variant ServerKRT79
ExAC (Exome Aggregation Consortium)KRT79 (select the gene name)
Genetic variants : HAPMAP338785
Genomic Variants (DGV)KRT79 [DGVbeta]
DECIPHERKRT79 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT79 
Mutations
ICGC Data PortalKRT79 
TCGA Data PortalKRT79 
Broad Tumor PortalKRT79
OASIS PortalKRT79 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT79  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT79
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT79
DgiDB (Drug Gene Interaction Database)KRT79
DoCM (Curated mutations)KRT79 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT79 (select a term)
intoGenKRT79
Cancer3DKRT79(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611160   
Orphanet
MedgenKRT79
Genetic Testing Registry KRT79
NextProtQ5XKE5 [Medical]
TSGene338785
GENETestsKRT79
Target ValidationKRT79
Huge Navigator KRT79 [HugePedia]
snp3D : Map Gene to Disease338785
BioCentury BCIQKRT79
ClinGenKRT79
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338785
Chemical/Pharm GKB GenePA162393725
Clinical trialKRT79
Miscellaneous
canSAR (ICR)KRT79 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT79
EVEXKRT79
GoPubMedKRT79
iHOPKRT79
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:18:42 CEST 2017

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