Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT80 (keratin 80)

Identity

Alias_nameskeratin 80
Alias_symbol (synonym)KB20
Other alias
HGNC (Hugo) KRT80
LocusID (NCBI) 144501
Atlas_Id 47366
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52168996 and ends at 52192000 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT80   27056
Cards
Entrez_Gene (NCBI)KRT80  144501  keratin 80
AliasesKB20
GeneCards (Weizmann)KRT80
Ensembl hg19 (Hinxton)ENSG00000167767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167767 [Gene_View]  chr12:52168996-52192000 [Contig_View]  KRT80 [Vega]
ICGC DataPortalENSG00000167767
TCGA cBioPortalKRT80
AceView (NCBI)KRT80
Genatlas (Paris)KRT80
WikiGenes144501
SOURCE (Princeton)KRT80
Genetics Home Reference (NIH)KRT80
Genomic and cartography
GoldenPath hg38 (UCSC)KRT80  -     chr12:52168996-52192000 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT80  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT80 - 12q13.13 [CytoView hg19]  KRT80 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT80 [Mapview hg19]  KRT80 [Mapview hg38]
OMIM611161   
Gene and transcription
Genbank (Entrez)AJ717743 AL162069 BC033114 BC047308 BC065180
RefSeq transcript (Entrez)NM_001081492 NM_182507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT80
Cluster EST : UnigeneHs.140978 [ NCBI ]
CGAP (NCI)Hs.140978
Alternative Splicing GalleryENSG00000167767
Gene ExpressionKRT80 [ NCBI-GEO ]   KRT80 [ EBI - ARRAY_EXPRESS ]   KRT80 [ SEEK ]   KRT80 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT80 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144501
GTEX Portal (Tissue expression)KRT80
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6KB66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6KB66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6KB66
Splice isoforms : SwissVarQ6KB66
PhosPhoSitePlusQ6KB66
Domains : Interpro (EBI)IF    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT80
DMDM Disease mutations144501
Blocks (Seattle)KRT80
SuperfamilyQ6KB66
Human Protein AtlasENSG00000167767
Peptide AtlasQ6KB66
HPRD14068
IPIIPI00853265   IPI00431749   IPI00375843   
Protein Interaction databases
DIP (DOE-UCLA)Q6KB66
IntAct (EBI)Q6KB66
FunCoupENSG00000167767
BioGRIDKRT80
STRING (EMBL)KRT80
ZODIACKRT80
Ontologies - Pathways
QuickGOQ6KB66
Ontology : AmiGOstructural molecule activity  protein binding  cytosol  keratinization  keratin filament  intermediate filament cytoskeleton  cornification  
Ontology : EGO-EBIstructural molecule activity  protein binding  cytosol  keratinization  keratin filament  intermediate filament cytoskeleton  cornification  
NDEx NetworkKRT80
Atlas of Cancer Signalling NetworkKRT80
Wikipedia pathwaysKRT80
Orthology - Evolution
OrthoDB144501
GeneTree (enSembl)ENSG00000167767
Phylogenetic Trees/Animal Genes : TreeFamKRT80
HOVERGENQ6KB66
HOGENOMQ6KB66
Homologs : HomoloGeneKRT80
Homology/Alignments : Family Browser (UCSC)KRT80
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT80 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT80
dbVarKRT80
ClinVarKRT80
1000_GenomesKRT80 
Exome Variant ServerKRT80
ExAC (Exome Aggregation Consortium)KRT80 (select the gene name)
Genetic variants : HAPMAP144501
Genomic Variants (DGV)KRT80 [DGVbeta]
DECIPHERKRT80 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT80 
Mutations
ICGC Data PortalKRT80 
TCGA Data PortalKRT80 
Broad Tumor PortalKRT80
OASIS PortalKRT80 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT80  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT80
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT80
DgiDB (Drug Gene Interaction Database)KRT80
DoCM (Curated mutations)KRT80 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT80 (select a term)
intoGenKRT80
Cancer3DKRT80(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611161   
Orphanet
MedgenKRT80
Genetic Testing Registry KRT80
NextProtQ6KB66 [Medical]
TSGene144501
GENETestsKRT80
Target ValidationKRT80
Huge Navigator KRT80 [HugePedia]
snp3D : Map Gene to Disease144501
BioCentury BCIQKRT80
ClinGenKRT80
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144501
Chemical/Pharm GKB GenePA147357831
Clinical trialKRT80
Miscellaneous
canSAR (ICR)KRT80 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT80
EVEXKRT80
GoPubMedKRT80
iHOPKRT80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:14:55 CEST 2017

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